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1
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2017-07-28T14:04:38.351322652Z cwltool INFO: /usr/local/bin/arvados-cwl-runner 0c817f2f98fc9f15bf36ec226da2e72afb34edd5 1.0.20170727113430, arvados-python-client 0.1.20170717175001, cwltool 1.0.20170727112954
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2
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2017-07-28T14:04:38.353322420Z cwltool INFO: Resolved '/var/lib/cwl/workflow.json#main' to 'file:///var/lib/cwl/workflow.json#main'
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3
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2017-07-28T14:04:39.383468896Z arvados.cwl-runner.metrics DEBUG: ENTER jobiter 1501250679.38
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4
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2017-07-28T14:04:39.387084694Z cwltool DEBUG: [workflow workflow.json#main] initialized from file:///var/lib/cwl/workflow.json#main
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5
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2017-07-28T14:04:39.387084694Z arvados.cwl-runner.metrics DEBUG: EXIT jobiter 1501250679.39 0.00417113304138
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6
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2017-07-28T14:04:39.387362781Z arvados.cwl-runner.metrics DEBUG: ENTER run 1501250679.39
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7
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2017-07-28T14:04:39.387748118Z cwltool INFO: [workflow workflow.json#main] start
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8
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2017-07-28T14:04:39.387764630Z arvados.cwl-runner.metrics DEBUG: EXIT run 1501250679.39 0.000509977340698
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9
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2017-07-28T14:04:39.388281763Z arvados.cwl-runner.metrics DEBUG: ENTER jobiter 1501250679.39
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10
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2017-07-28T14:04:39.389882376Z cwltool DEBUG: [workflow workflow.json#main] starting step step1
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11
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2017-07-28T14:04:39.390961520Z cwltool INFO: [step step1] start
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12
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2017-07-28T14:04:39.390981479Z cwltool DEBUG: [job step1] initializing from file:///var/lib/cwl/workflow.json#echo as part of step step1
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13
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2017-07-28T14:04:39.391271997Z cwltool DEBUG: [job step1] {
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14
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2017-07-28T14:04:39.391271997Z "echo_in1": "one",
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15
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2017-07-28T14:04:39.391271997Z "echo_in2": "three"
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16
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2017-07-28T14:04:39.391271997Z }
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17
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2017-07-28T14:04:39.421021871Z cwltool DEBUG: [job step1] path mappings is {}
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18
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2017-07-28T14:04:39.421471356Z cwltool DEBUG: [job step1] command line bindings is [
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19
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2017-07-28T14:04:39.421471356Z {
|
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20
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2017-07-28T14:04:39.421471356Z "position": [
|
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21
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2017-07-28T14:04:39.421471356Z -1000000,
|
|
22
|
2017-07-28T14:04:39.421471356Z 0
|
|
23
|
2017-07-28T14:04:39.421471356Z ],
|
|
24
|
2017-07-28T14:04:39.421471356Z "datum": "echo"
|
|
25
|
2017-07-28T14:04:39.421471356Z },
|
|
26
|
2017-07-28T14:04:39.421471356Z {
|
|
27
|
2017-07-28T14:04:39.421471356Z "position": [
|
|
28
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2017-07-28T14:04:39.421471356Z 0,
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|
29
|
2017-07-28T14:04:39.421471356Z 0
|
|
30
|
2017-07-28T14:04:39.421471356Z ],
|
|
31
|
2017-07-28T14:04:39.421471356Z "datum": "-n"
|
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32
|
2017-07-28T14:04:39.421471356Z },
|
|
33
|
2017-07-28T14:04:39.421471356Z {
|
|
34
|
2017-07-28T14:04:39.421471356Z "position": [
|
|
35
|
2017-07-28T14:04:39.421471356Z 0,
|
|
36
|
2017-07-28T14:04:39.421471356Z 1
|
|
37
|
2017-07-28T14:04:39.421471356Z ],
|
|
38
|
2017-07-28T14:04:39.421471356Z "datum": "foo"
|
|
39
|
2017-07-28T14:04:39.421471356Z },
|
|
40
|
2017-07-28T14:04:39.421471356Z {
|
|
41
|
2017-07-28T14:04:39.421471356Z "position": [
|
|
42
|
2017-07-28T14:04:39.421471356Z 0,
|
|
43
|
2017-07-28T14:04:39.421471356Z "echo_in1"
|
|
44
|
2017-07-28T14:04:39.421471356Z ],
|
|
45
|
2017-07-28T14:04:39.421471356Z "datum": "one"
|
|
46
|
2017-07-28T14:04:39.421471356Z },
|
|
47
|
2017-07-28T14:04:39.421471356Z {
|
|
48
|
2017-07-28T14:04:39.421471356Z "position": [
|
|
49
|
2017-07-28T14:04:39.421471356Z 0,
|
|
50
|
2017-07-28T14:04:39.421471356Z "echo_in2"
|
|
51
|
2017-07-28T14:04:39.421471356Z ],
|
|
52
|
2017-07-28T14:04:39.421471356Z "datum": "three"
|
|
53
|
2017-07-28T14:04:39.421471356Z }
|
|
54
|
2017-07-28T14:04:39.421471356Z ]
|
|
55
|
2017-07-28T14:04:39.422052512Z arvados.cwl-runner.metrics DEBUG: EXIT jobiter 1501250679.42 0.0341551303864
|
|
56
|
2017-07-28T14:04:39.422308983Z arvados.cwl-runner.metrics DEBUG: ENTER run 1501250679.42
|
|
57
|
2017-07-28T14:04:39.422327565Z arvados.cwl-runner.metrics DEBUG: ENTER generatefiles step1 1501250679.42
|
|
58
|
2017-07-28T14:04:39.422650234Z arvados.cwl-runner.metrics DEBUG: EXIT generatefiles step1 1501250679.42 0.000114917755127
|
|
59
|
2017-07-28T14:04:39.539487311Z arvados.cwl-runner.metrics DEBUG: EXIT run 1501250679.54 0.115173816681
|
|
60
|
2017-07-28T14:04:39.543241188Z arvados.cwl-runner ERROR: Execution failed: [Errno 2] No such file or directory
|
|
61
|
2017-07-28T14:04:39.543241188Z Traceback (most recent call last):
|
|
62
|
2017-07-28T14:04:39.543241188Z File "build/bdist.linux-x86_64/egg/arvados_cwl/__init__.py", line 493, in arv_executor
|
|
63
|
2017-07-28T14:04:39.543241188Z runnable.run(**kwargs)
|
|
64
|
2017-07-28T14:04:39.543241188Z File "build/bdist.linux-x86_64/egg/arvados_cwl/arvcontainer.py", line 155, in run
|
|
65
|
2017-07-28T14:04:39.543241188Z self.arvrunner.project_uuid)
|
|
66
|
2017-07-28T14:04:39.543241188Z File "build/bdist.linux-x86_64/egg/arvados_cwl/arvdocker.py", line 71, in arv_docker_get_image
|
|
67
|
2017-07-28T14:04:39.543241188Z cached_lookups[dockerRequirement["dockerImageId"]] = True
|
|
68
|
2017-07-28T14:04:39.543241188Z File "build/bdist.linux-x86_64/egg/schema_salad/sourceline.py", line 152, in __exit__
|
|
69
|
2017-07-28T14:04:39.543241188Z raise self.makeError(six.text_type(exc_value))
|
|
70
|
2017-07-28T14:04:39.543241188Z WorkflowException: [Errno 2] No such file or directory
|
|
71
|
2017-07-28T14:04:39.559679293Z cwltool ERROR: Workflow error, try again with --debug for more information:
|
|
72
|
2017-07-28T14:04:39.559679293Z Workflow did not return a result.
|
|
73
|
2017-07-28T14:04:39.559679293Z Traceback (most recent call last):
|
|
74
|
2017-07-28T14:04:39.559679293Z File "build/bdist.linux-x86_64/egg/cwltool/main.py", line 905, in main
|
|
75
|
2017-07-28T14:04:39.559679293Z **vars(args))
|
|
76
|
2017-07-28T14:04:39.559679293Z File "build/bdist.linux-x86_64/egg/arvados_cwl/__init__.py", line 528, in arv_executor
|
|
77
|
2017-07-28T14:04:39.559679293Z raise WorkflowException("Workflow did not return a result.")
|
|
78
|
2017-07-28T14:04:39.559679293Z WorkflowException: Workflow did not return a result.
|