1
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digraph cwlgraph {
|
2
|
rankdir=LR;
|
3
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graph [compound=true];
|
4
|
|
5
|
subgraph cluster_0 {
|
6
|
label="#createcgf-wf.cwl";
|
7
|
node [style=filled];
|
8
|
shape=box
|
9
|
style="filled";
|
10
|
color="#dddddd";
|
11
|
"#createcgf-wf.cwl" [ label = "#createcgf-wf.cwl", style = invis ];
|
12
|
|
13
|
|
14
|
"#createcgf-wf.cwl
|
15
|
getdirs
|
16
|
fjdirs" -> "step #createcgf-wf.cwl
|
17
|
createcgf";
|
18
|
"#createcgf-wf.cwl
|
19
|
lib" -> "step #createcgf-wf.cwl
|
20
|
createcgf";
|
21
|
"#createcgf-wf.cwl
|
22
|
skippaths" -> "step #createcgf-wf.cwl
|
23
|
createcgf";
|
24
|
"step #createcgf-wf.cwl
|
25
|
createcgf" -> "#createcgf-wf.cwl
|
26
|
createcgf
|
27
|
cgf";
|
28
|
"#createcgf-wf.cwl
|
29
|
fjdir" -> "step #createcgf-wf.cwl
|
30
|
getdirs";
|
31
|
"step #createcgf-wf.cwl
|
32
|
getdirs" -> "#createcgf-wf.cwl
|
33
|
getdirs
|
34
|
fjdirs";
|
35
|
}
|
36
|
|
37
|
subgraph cluster_1 {
|
38
|
label="#check-cgf-gvcf-wf.cwl";
|
39
|
node [style=filled];
|
40
|
shape=box
|
41
|
style="filled";
|
42
|
color="#dddddd";
|
43
|
"#check-cgf-gvcf-wf.cwl" [ label = "#check-cgf-gvcf-wf.cwl", style = invis ];
|
44
|
|
45
|
|
46
|
"#check-cgf-gvcf-wf.cwl
|
47
|
cgfdir" -> "step #check-cgf-gvcf-wf.cwl
|
48
|
check-cgf-gvcf";
|
49
|
"#check-cgf-gvcf-wf.cwl
|
50
|
checknum" -> "step #check-cgf-gvcf-wf.cwl
|
51
|
check-cgf-gvcf";
|
52
|
"#check-cgf-gvcf-wf.cwl
|
53
|
chroms" -> "step #check-cgf-gvcf-wf.cwl
|
54
|
check-cgf-gvcf";
|
55
|
"#check-cgf-gvcf-wf.cwl
|
56
|
gvcfdir" -> "step #check-cgf-gvcf-wf.cwl
|
57
|
check-cgf-gvcf";
|
58
|
"#check-cgf-gvcf-wf.cwl
|
59
|
ref" -> "step #check-cgf-gvcf-wf.cwl
|
60
|
check-cgf-gvcf";
|
61
|
"#check-cgf-gvcf-wf.cwl
|
62
|
reffa" -> "step #check-cgf-gvcf-wf.cwl
|
63
|
check-cgf-gvcf";
|
64
|
"#check-cgf-gvcf-wf.cwl
|
65
|
sglfdir" -> "step #check-cgf-gvcf-wf.cwl
|
66
|
check-cgf-gvcf";
|
67
|
"#check-cgf-gvcf-wf.cwl
|
68
|
tileassembly" -> "step #check-cgf-gvcf-wf.cwl
|
69
|
check-cgf-gvcf";
|
70
|
"step #check-cgf-gvcf-wf.cwl
|
71
|
check-cgf-gvcf" -> "#check-cgf-gvcf-wf.cwl
|
72
|
check-cgf-gvcf
|
73
|
gvcfhash";
|
74
|
}
|
75
|
|
76
|
subgraph cluster_2 {
|
77
|
label="#fastj2cgf-wf.cwl";
|
78
|
node [style=filled];
|
79
|
shape=box
|
80
|
style="filled";
|
81
|
color="#dddddd";
|
82
|
"#fastj2cgf-wf.cwl" [ label = "#fastj2cgf-wf.cwl", style = invis ];
|
83
|
|
84
|
|
85
|
"#fastj2cgf-wf.cwl
|
86
|
fjdir" -> "step #fastj2cgf-wf.cwl
|
87
|
createcgf-wf";
|
88
|
"#fastj2cgf-wf.cwl
|
89
|
merge-tilelib
|
90
|
mergedlib" -> "step #fastj2cgf-wf.cwl
|
91
|
createcgf-wf";
|
92
|
"#fastj2cgf-wf.cwl
|
93
|
getsglfsize
|
94
|
skippaths" -> "step #fastj2cgf-wf.cwl
|
95
|
createcgf-wf";
|
96
|
"#fastj2cgf-wf.cwl
|
97
|
sglf-sanity-check
|
98
|
log" -> "step #fastj2cgf-wf.cwl
|
99
|
createcgf-wf";
|
100
|
"step #fastj2cgf-wf.cwl
|
101
|
createcgf-wf" -> "#fastj2cgf-wf.cwl
|
102
|
createcgf-wf
|
103
|
cgfs";
|
104
|
"#fastj2cgf-wf.cwl
|
105
|
fjdir" -> "step #fastj2cgf-wf.cwl
|
106
|
createsglf-wf";
|
107
|
"#fastj2cgf-wf.cwl
|
108
|
nchunks" -> "step #fastj2cgf-wf.cwl
|
109
|
createsglf-wf";
|
110
|
"#fastj2cgf-wf.cwl
|
111
|
pathmax" -> "step #fastj2cgf-wf.cwl
|
112
|
createsglf-wf";
|
113
|
"#fastj2cgf-wf.cwl
|
114
|
pathmin" -> "step #fastj2cgf-wf.cwl
|
115
|
createsglf-wf";
|
116
|
"#fastj2cgf-wf.cwl
|
117
|
tagset" -> "step #fastj2cgf-wf.cwl
|
118
|
createsglf-wf";
|
119
|
"step #fastj2cgf-wf.cwl
|
120
|
createsglf-wf" -> "#fastj2cgf-wf.cwl
|
121
|
createsglf-wf
|
122
|
sglfs";
|
123
|
"#fastj2cgf-wf.cwl
|
124
|
merge-tilelib
|
125
|
mergedlib" -> "step #fastj2cgf-wf.cwl
|
126
|
getsglfsize";
|
127
|
"#fastj2cgf-wf.cwl
|
128
|
sglfthreshold" -> "step #fastj2cgf-wf.cwl
|
129
|
getsglfsize";
|
130
|
"step #fastj2cgf-wf.cwl
|
131
|
getsglfsize" -> "#fastj2cgf-wf.cwl
|
132
|
getsglfsize
|
133
|
sglfsize";
|
134
|
"step #fastj2cgf-wf.cwl
|
135
|
getsglfsize" -> "#fastj2cgf-wf.cwl
|
136
|
getsglfsize
|
137
|
skippaths";
|
138
|
"#fastj2cgf-wf.cwl
|
139
|
createcgf-wf
|
140
|
cgfs" -> "step #fastj2cgf-wf.cwl
|
141
|
handle-cgfs";
|
142
|
"#fastj2cgf-wf.cwl
|
143
|
handle-cgfs
|
144
|
dirname" -> "step #fastj2cgf-wf.cwl
|
145
|
handle-cgfs";
|
146
|
"step #fastj2cgf-wf.cwl
|
147
|
handle-cgfs" -> "#fastj2cgf-wf.cwl
|
148
|
handle-cgfs
|
149
|
dir";
|
150
|
"#fastj2cgf-wf.cwl
|
151
|
handle-sglfs
|
152
|
dirname" -> "step #fastj2cgf-wf.cwl
|
153
|
handle-sglfs";
|
154
|
"#fastj2cgf-wf.cwl
|
155
|
createsglf-wf
|
156
|
sglfs" -> "step #fastj2cgf-wf.cwl
|
157
|
handle-sglfs";
|
158
|
"step #fastj2cgf-wf.cwl
|
159
|
handle-sglfs" -> "#fastj2cgf-wf.cwl
|
160
|
handle-sglfs
|
161
|
dir";
|
162
|
"#fastj2cgf-wf.cwl
|
163
|
handle-sglfs
|
164
|
dir" -> "step #fastj2cgf-wf.cwl
|
165
|
merge-tilelib";
|
166
|
"#fastj2cgf-wf.cwl
|
167
|
srclib" -> "step #fastj2cgf-wf.cwl
|
168
|
merge-tilelib";
|
169
|
"step #fastj2cgf-wf.cwl
|
170
|
merge-tilelib" -> "#fastj2cgf-wf.cwl
|
171
|
merge-tilelib
|
172
|
mergedlib";
|
173
|
"#fastj2cgf-wf.cwl
|
174
|
merge-tilelib
|
175
|
mergedlib" -> "step #fastj2cgf-wf.cwl
|
176
|
sglf-sanity-check";
|
177
|
"step #fastj2cgf-wf.cwl
|
178
|
sglf-sanity-check" -> "#fastj2cgf-wf.cwl
|
179
|
sglf-sanity-check
|
180
|
log";
|
181
|
}
|
182
|
|
183
|
subgraph cluster_3 {
|
184
|
label="#main";
|
185
|
node [style=filled];
|
186
|
shape=box
|
187
|
style="filled";
|
188
|
color="#dddddd";
|
189
|
"#main" [ label = "#main", style = invis ];
|
190
|
|
191
|
|
192
|
"#main
|
193
|
fastj2cgf-wf
|
194
|
cgfdir" -> "step #main
|
195
|
check-cgf-gvcf-wf";
|
196
|
"#main
|
197
|
checknum" -> "step #main
|
198
|
check-cgf-gvcf-wf";
|
199
|
"#main
|
200
|
checkchroms" -> "step #main
|
201
|
check-cgf-gvcf-wf";
|
202
|
"#main
|
203
|
gvcfdir" -> "step #main
|
204
|
check-cgf-gvcf-wf";
|
205
|
"#main
|
206
|
ref" -> "step #main
|
207
|
check-cgf-gvcf-wf";
|
208
|
"#main
|
209
|
reffa" -> "step #main
|
210
|
check-cgf-gvcf-wf";
|
211
|
"#main
|
212
|
fastj2cgf-wf
|
213
|
lib" -> "step #main
|
214
|
check-cgf-gvcf-wf";
|
215
|
"#main
|
216
|
afn" -> "step #main
|
217
|
check-cgf-gvcf-wf";
|
218
|
"step #main
|
219
|
check-cgf-gvcf-wf" -> "#main
|
220
|
check-cgf-gvcf-wf
|
221
|
gvcfhashes";
|
222
|
"#main
|
223
|
fastj2cgf-wf
|
224
|
cgfdir" -> "step #main
|
225
|
createnpy-wf";
|
226
|
"#main
|
227
|
check-cgf-gvcf-wf
|
228
|
gvcfhashes" -> "step #main
|
229
|
createnpy-wf";
|
230
|
"step #main
|
231
|
createnpy-wf" -> "#main
|
232
|
createnpy-wf
|
233
|
consolnpydir";
|
234
|
"step #main
|
235
|
createnpy-wf" -> "#main
|
236
|
createnpy-wf
|
237
|
names";
|
238
|
"#main
|
239
|
fjdir" -> "step #main
|
240
|
fastj2cgf-wf";
|
241
|
"#main
|
242
|
nchunks" -> "step #main
|
243
|
fastj2cgf-wf";
|
244
|
"#main
|
245
|
pathmax" -> "step #main
|
246
|
fastj2cgf-wf";
|
247
|
"#main
|
248
|
pathmin" -> "step #main
|
249
|
fastj2cgf-wf";
|
250
|
"#main
|
251
|
sglfthreshold" -> "step #main
|
252
|
fastj2cgf-wf";
|
253
|
"#main
|
254
|
srclib" -> "step #main
|
255
|
fastj2cgf-wf";
|
256
|
"#main
|
257
|
tagset" -> "step #main
|
258
|
fastj2cgf-wf";
|
259
|
"step #main
|
260
|
fastj2cgf-wf" -> "#main
|
261
|
fastj2cgf-wf
|
262
|
lib";
|
263
|
"step #main
|
264
|
fastj2cgf-wf" -> "#main
|
265
|
fastj2cgf-wf
|
266
|
sglfsize";
|
267
|
"step #main
|
268
|
fastj2cgf-wf" -> "#main
|
269
|
fastj2cgf-wf
|
270
|
skippaths";
|
271
|
"step #main
|
272
|
fastj2cgf-wf" -> "#main
|
273
|
fastj2cgf-wf
|
274
|
cgfdir";
|
275
|
}
|
276
|
|
277
|
subgraph cluster_4 {
|
278
|
label="#createnpy-wf.cwl";
|
279
|
node [style=filled];
|
280
|
shape=box
|
281
|
style="filled";
|
282
|
color="#dddddd";
|
283
|
"#createnpy-wf.cwl" [ label = "#createnpy-wf.cwl", style = invis ];
|
284
|
|
285
|
|
286
|
"#createnpy-wf.cwl
|
287
|
createnpy
|
288
|
npydir" -> "step #createnpy-wf.cwl
|
289
|
consolnpy";
|
290
|
"step #createnpy-wf.cwl
|
291
|
consolnpy" -> "#createnpy-wf.cwl
|
292
|
consolnpy
|
293
|
consolnpydir";
|
294
|
"#createnpy-wf.cwl
|
295
|
cgfdir" -> "step #createnpy-wf.cwl
|
296
|
createnpy";
|
297
|
"step #createnpy-wf.cwl
|
298
|
createnpy" -> "#createnpy-wf.cwl
|
299
|
createnpy
|
300
|
npydir";
|
301
|
"step #createnpy-wf.cwl
|
302
|
createnpy" -> "#createnpy-wf.cwl
|
303
|
createnpy
|
304
|
names";
|
305
|
}
|
306
|
|
307
|
subgraph cluster_5 {
|
308
|
label="#createsglf-wf.cwl";
|
309
|
node [style=filled];
|
310
|
shape=box
|
311
|
style="filled";
|
312
|
color="#dddddd";
|
313
|
"#createsglf-wf.cwl" [ label = "#createsglf-wf.cwl", style = invis ];
|
314
|
|
315
|
|
316
|
"#createsglf-wf.cwl
|
317
|
fjdir" -> "step #createsglf-wf.cwl
|
318
|
createsglf";
|
319
|
"#createsglf-wf.cwl
|
320
|
tagset" -> "step #createsglf-wf.cwl
|
321
|
createsglf";
|
322
|
"#createsglf-wf.cwl
|
323
|
getpaths
|
324
|
maxpaths" -> "step #createsglf-wf.cwl
|
325
|
createsglf";
|
326
|
"#createsglf-wf.cwl
|
327
|
getpaths
|
328
|
minpaths" -> "step #createsglf-wf.cwl
|
329
|
createsglf";
|
330
|
"step #createsglf-wf.cwl
|
331
|
createsglf" -> "#createsglf-wf.cwl
|
332
|
createsglf
|
333
|
chunksglfs";
|
334
|
"#createsglf-wf.cwl
|
335
|
nchunks" -> "step #createsglf-wf.cwl
|
336
|
getpaths";
|
337
|
"#createsglf-wf.cwl
|
338
|
pathmax" -> "step #createsglf-wf.cwl
|
339
|
getpaths";
|
340
|
"#createsglf-wf.cwl
|
341
|
pathmin" -> "step #createsglf-wf.cwl
|
342
|
getpaths";
|
343
|
"step #createsglf-wf.cwl
|
344
|
getpaths" -> "#createsglf-wf.cwl
|
345
|
getpaths
|
346
|
minpaths";
|
347
|
"step #createsglf-wf.cwl
|
348
|
getpaths" -> "#createsglf-wf.cwl
|
349
|
getpaths
|
350
|
maxpaths";
|
351
|
}
|
352
|
|
353
|
|
354
|
|
355
|
"step #createcgf-wf.cwl
|
356
|
createcgf" [fillcolor="#FFD700", style="rounded,filled", shape=box];
|
357
|
"step #createcgf-wf.cwl
|
358
|
getdirs" [fillcolor="#FFD700", style="rounded,filled", shape=box];
|
359
|
"#createcgf.cwl" [fillcolor="#FF9912", style="rounded,filled", shape=box];
|
360
|
"#getdirs.cwl" [fillcolor="#D7D7EE", style="rounded,filled", shape=box];
|
361
|
"step #check-cgf-gvcf-wf.cwl
|
362
|
check-cgf-gvcf" [fillcolor="#FFD700", style="rounded,filled", shape=box];
|
363
|
"#check-cgf-gvcf.cwl" [fillcolor="#FF9912", style="rounded,filled", shape=box];
|
364
|
"#getsglfsize.cwl" [fillcolor="#FF9912", style="rounded,filled", shape=box];
|
365
|
"#sglf-sanity-check.cwl" [fillcolor="#FF9912", style="rounded,filled", shape=box];
|
366
|
"#array-to-dir.cwl" [fillcolor="#D7D7EE", style="rounded,filled", shape=box];
|
367
|
"#nestedarray-to-dir.cwl" [fillcolor="#D7D7EE", style="rounded,filled", shape=box];
|
368
|
"step #fastj2cgf-wf.cwl
|
369
|
createcgf-wf" [fillcolor="#FFD700", style="rounded,filled", shape=box];
|
370
|
"step #fastj2cgf-wf.cwl
|
371
|
createsglf-wf" [fillcolor="#FFD700", style="rounded,filled", shape=box];
|
372
|
"step #fastj2cgf-wf.cwl
|
373
|
getsglfsize" [fillcolor="#FFD700", style="rounded,filled", shape=box];
|
374
|
"step #fastj2cgf-wf.cwl
|
375
|
handle-cgfs" [fillcolor="#FFD700", style="rounded,filled", shape=box];
|
376
|
"step #fastj2cgf-wf.cwl
|
377
|
handle-sglfs" [fillcolor="#FFD700", style="rounded,filled", shape=box];
|
378
|
"step #fastj2cgf-wf.cwl
|
379
|
merge-tilelib" [fillcolor="#FFD700", style="rounded,filled", shape=box];
|
380
|
"step #fastj2cgf-wf.cwl
|
381
|
sglf-sanity-check" [fillcolor="#FFD700", style="rounded,filled", shape=box];
|
382
|
"step #main
|
383
|
check-cgf-gvcf-wf" [fillcolor="#FFD700", style="rounded,filled", shape=box];
|
384
|
"step #main
|
385
|
createnpy-wf" [fillcolor="#FFD700", style="rounded,filled", shape=box];
|
386
|
"step #main
|
387
|
fastj2cgf-wf" [fillcolor="#FFD700", style="rounded,filled", shape=box];
|
388
|
"#consolnpy.cwl" [fillcolor="#FF9912", style="rounded,filled", shape=box];
|
389
|
"step #createnpy-wf.cwl
|
390
|
consolnpy" [fillcolor="#FFD700", style="rounded,filled", shape=box];
|
391
|
"step #createnpy-wf.cwl
|
392
|
createnpy" [fillcolor="#FFD700", style="rounded,filled", shape=box];
|
393
|
"#createnpy.cwl" [fillcolor="#FF9912", style="rounded,filled", shape=box];
|
394
|
"step #createsglf-wf.cwl
|
395
|
createsglf" [fillcolor="#FFD700", style="rounded,filled", shape=box];
|
396
|
"step #createsglf-wf.cwl
|
397
|
getpaths" [fillcolor="#FFD700", style="rounded,filled", shape=box];
|
398
|
"#createsglf.cwl" [fillcolor="#FF9912", style="rounded,filled", shape=box];
|
399
|
"#getpaths.cwl" [fillcolor="#D7D7EE", style="rounded,filled", shape=box];
|
400
|
"#merge-tilelib.cwl" [fillcolor="#FF9912", style="rounded,filled", shape=box];
|
401
|
|
402
|
|
403
|
"step #createcgf-wf.cwl
|
404
|
createcgf" -> "#createcgf.cwl" [label="runs", style="dashed"];
|
405
|
"step #createcgf-wf.cwl
|
406
|
getdirs" -> "#getdirs.cwl" [label="runs", style="dashed"];
|
407
|
"step #check-cgf-gvcf-wf.cwl
|
408
|
check-cgf-gvcf" -> "#check-cgf-gvcf.cwl" [label="runs", style="dashed"];
|
409
|
"step #fastj2cgf-wf.cwl
|
410
|
createcgf-wf" -> "#createcgf-wf.cwl" [label="runs", style="dashed", lhead="cluster_0",label=" "];
|
411
|
"step #fastj2cgf-wf.cwl
|
412
|
createsglf-wf" -> "#createsglf-wf.cwl" [label="runs", style="dashed"];
|
413
|
"step #fastj2cgf-wf.cwl
|
414
|
getsglfsize" -> "#getsglfsize.cwl" [label="runs", style="dashed"];
|
415
|
"step #fastj2cgf-wf.cwl
|
416
|
handle-cgfs" -> "#array-to-dir.cwl" [label="runs", style="dashed"];
|
417
|
"step #fastj2cgf-wf.cwl
|
418
|
handle-sglfs" -> "#nestedarray-to-dir.cwl" [label="runs", style="dashed"];
|
419
|
"step #fastj2cgf-wf.cwl
|
420
|
merge-tilelib" -> "#merge-tilelib.cwl" [label="runs", style="dashed"];
|
421
|
"step #fastj2cgf-wf.cwl
|
422
|
sglf-sanity-check" -> "#sglf-sanity-check.cwl" [label="runs", style="dashed"];
|
423
|
"step #main
|
424
|
check-cgf-gvcf-wf" -> "#check-cgf-gvcf-wf.cwl" [label="runs", style="dashed", lhead="cluster_1",label=" "];
|
425
|
"step #main
|
426
|
createnpy-wf" -> "#createnpy-wf.cwl" [label="runs", style="dashed"];
|
427
|
"step #main
|
428
|
fastj2cgf-wf" -> "#fastj2cgf-wf.cwl" [label="runs", style="dashed", lhead="cluster_2",label=" "];
|
429
|
"step #createnpy-wf.cwl
|
430
|
consolnpy" -> "#consolnpy.cwl" [label="runs", style="dashed"];
|
431
|
"step #createnpy-wf.cwl
|
432
|
createnpy" -> "#createnpy.cwl" [label="runs", style="dashed"];
|
433
|
"step #createsglf-wf.cwl
|
434
|
createsglf" -> "#createsglf.cwl" [label="runs", style="dashed"];
|
435
|
"step #createsglf-wf.cwl
|
436
|
getpaths" -> "#getpaths.cwl" [label="runs", style="dashed"];
|
437
|
}
|