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1
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digraph cwlgraph {
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2
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rankdir=LR;
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3
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graph [compound=true];
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4
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5
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subgraph cluster_0 {
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6
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label="#createcgf-wf.cwl";
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7
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node [style=filled];
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8
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shape=box
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9
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style="filled";
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10
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color="#dddddd";
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11
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"#createcgf-wf.cwl" [ label = "#createcgf-wf.cwl", style = invis ];
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12
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13
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14
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"#createcgf-wf.cwl
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15
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getdirs
|
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16
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fjdirs" -> "step #createcgf-wf.cwl
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17
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createcgf";
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18
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"#createcgf-wf.cwl
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19
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lib" -> "step #createcgf-wf.cwl
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20
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createcgf";
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21
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"#createcgf-wf.cwl
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22
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skippaths" -> "step #createcgf-wf.cwl
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23
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createcgf";
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24
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"step #createcgf-wf.cwl
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25
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createcgf" -> "#createcgf-wf.cwl
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26
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createcgf
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27
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cgf";
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28
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"#createcgf-wf.cwl
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29
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fjdir" -> "step #createcgf-wf.cwl
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30
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getdirs";
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31
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"step #createcgf-wf.cwl
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32
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getdirs" -> "#createcgf-wf.cwl
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33
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getdirs
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34
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fjdirs";
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35
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}
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36
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37
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subgraph cluster_1 {
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38
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label="#check-cgf-gvcf-wf.cwl";
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39
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node [style=filled];
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40
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shape=box
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41
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style="filled";
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42
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color="#dddddd";
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43
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"#check-cgf-gvcf-wf.cwl" [ label = "#check-cgf-gvcf-wf.cwl", style = invis ];
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44
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45
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46
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"#check-cgf-gvcf-wf.cwl
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47
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cgfdir" -> "step #check-cgf-gvcf-wf.cwl
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48
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check-cgf-gvcf";
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49
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"#check-cgf-gvcf-wf.cwl
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50
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checknum" -> "step #check-cgf-gvcf-wf.cwl
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51
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check-cgf-gvcf";
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52
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"#check-cgf-gvcf-wf.cwl
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53
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chroms" -> "step #check-cgf-gvcf-wf.cwl
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54
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check-cgf-gvcf";
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55
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"#check-cgf-gvcf-wf.cwl
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56
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gvcfdir" -> "step #check-cgf-gvcf-wf.cwl
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57
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check-cgf-gvcf";
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58
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"#check-cgf-gvcf-wf.cwl
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59
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ref" -> "step #check-cgf-gvcf-wf.cwl
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60
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check-cgf-gvcf";
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61
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"#check-cgf-gvcf-wf.cwl
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62
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reffa" -> "step #check-cgf-gvcf-wf.cwl
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63
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check-cgf-gvcf";
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64
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"#check-cgf-gvcf-wf.cwl
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65
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sglfdir" -> "step #check-cgf-gvcf-wf.cwl
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66
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check-cgf-gvcf";
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67
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"#check-cgf-gvcf-wf.cwl
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68
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tileassembly" -> "step #check-cgf-gvcf-wf.cwl
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69
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check-cgf-gvcf";
|
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70
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"step #check-cgf-gvcf-wf.cwl
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71
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check-cgf-gvcf" -> "#check-cgf-gvcf-wf.cwl
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72
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check-cgf-gvcf
|
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73
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gvcfhash";
|
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74
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}
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75
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76
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subgraph cluster_2 {
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77
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label="#fastj2cgf-wf.cwl";
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78
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node [style=filled];
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79
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shape=box
|
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80
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style="filled";
|
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81
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color="#dddddd";
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82
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"#fastj2cgf-wf.cwl" [ label = "#fastj2cgf-wf.cwl", style = invis ];
|
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83
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|
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84
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|
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85
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"#fastj2cgf-wf.cwl
|
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86
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fjdir" -> "step #fastj2cgf-wf.cwl
|
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87
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createcgf-wf";
|
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88
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"#fastj2cgf-wf.cwl
|
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89
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merge-tilelib
|
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90
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mergedlib" -> "step #fastj2cgf-wf.cwl
|
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91
|
createcgf-wf";
|
|
92
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"#fastj2cgf-wf.cwl
|
|
93
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getsglfsize
|
|
94
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skippaths" -> "step #fastj2cgf-wf.cwl
|
|
95
|
createcgf-wf";
|
|
96
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"#fastj2cgf-wf.cwl
|
|
97
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sglf-sanity-check
|
|
98
|
log" -> "step #fastj2cgf-wf.cwl
|
|
99
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createcgf-wf";
|
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100
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"step #fastj2cgf-wf.cwl
|
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101
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createcgf-wf" -> "#fastj2cgf-wf.cwl
|
|
102
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createcgf-wf
|
|
103
|
cgfs";
|
|
104
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"#fastj2cgf-wf.cwl
|
|
105
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fjdir" -> "step #fastj2cgf-wf.cwl
|
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106
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createsglf-wf";
|
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107
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"#fastj2cgf-wf.cwl
|
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108
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nchunks" -> "step #fastj2cgf-wf.cwl
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109
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createsglf-wf";
|
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110
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"#fastj2cgf-wf.cwl
|
|
111
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pathmax" -> "step #fastj2cgf-wf.cwl
|
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112
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createsglf-wf";
|
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113
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"#fastj2cgf-wf.cwl
|
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114
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pathmin" -> "step #fastj2cgf-wf.cwl
|
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115
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createsglf-wf";
|
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116
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"#fastj2cgf-wf.cwl
|
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117
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tagset" -> "step #fastj2cgf-wf.cwl
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118
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createsglf-wf";
|
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119
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"step #fastj2cgf-wf.cwl
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120
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createsglf-wf" -> "#fastj2cgf-wf.cwl
|
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121
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createsglf-wf
|
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122
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sglfs";
|
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123
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"#fastj2cgf-wf.cwl
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124
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merge-tilelib
|
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125
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mergedlib" -> "step #fastj2cgf-wf.cwl
|
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126
|
getsglfsize";
|
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127
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"#fastj2cgf-wf.cwl
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128
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sglfthreshold" -> "step #fastj2cgf-wf.cwl
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129
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getsglfsize";
|
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130
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"step #fastj2cgf-wf.cwl
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131
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getsglfsize" -> "#fastj2cgf-wf.cwl
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132
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getsglfsize
|
|
133
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sglfsize";
|
|
134
|
"step #fastj2cgf-wf.cwl
|
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135
|
getsglfsize" -> "#fastj2cgf-wf.cwl
|
|
136
|
getsglfsize
|
|
137
|
skippaths";
|
|
138
|
"#fastj2cgf-wf.cwl
|
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139
|
createcgf-wf
|
|
140
|
cgfs" -> "step #fastj2cgf-wf.cwl
|
|
141
|
handle-cgfs";
|
|
142
|
"#fastj2cgf-wf.cwl
|
|
143
|
handle-cgfs
|
|
144
|
dirname" -> "step #fastj2cgf-wf.cwl
|
|
145
|
handle-cgfs";
|
|
146
|
"step #fastj2cgf-wf.cwl
|
|
147
|
handle-cgfs" -> "#fastj2cgf-wf.cwl
|
|
148
|
handle-cgfs
|
|
149
|
dir";
|
|
150
|
"#fastj2cgf-wf.cwl
|
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151
|
handle-sglfs
|
|
152
|
dirname" -> "step #fastj2cgf-wf.cwl
|
|
153
|
handle-sglfs";
|
|
154
|
"#fastj2cgf-wf.cwl
|
|
155
|
createsglf-wf
|
|
156
|
sglfs" -> "step #fastj2cgf-wf.cwl
|
|
157
|
handle-sglfs";
|
|
158
|
"step #fastj2cgf-wf.cwl
|
|
159
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handle-sglfs" -> "#fastj2cgf-wf.cwl
|
|
160
|
handle-sglfs
|
|
161
|
dir";
|
|
162
|
"#fastj2cgf-wf.cwl
|
|
163
|
handle-sglfs
|
|
164
|
dir" -> "step #fastj2cgf-wf.cwl
|
|
165
|
merge-tilelib";
|
|
166
|
"#fastj2cgf-wf.cwl
|
|
167
|
srclib" -> "step #fastj2cgf-wf.cwl
|
|
168
|
merge-tilelib";
|
|
169
|
"step #fastj2cgf-wf.cwl
|
|
170
|
merge-tilelib" -> "#fastj2cgf-wf.cwl
|
|
171
|
merge-tilelib
|
|
172
|
mergedlib";
|
|
173
|
"#fastj2cgf-wf.cwl
|
|
174
|
merge-tilelib
|
|
175
|
mergedlib" -> "step #fastj2cgf-wf.cwl
|
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176
|
sglf-sanity-check";
|
|
177
|
"step #fastj2cgf-wf.cwl
|
|
178
|
sglf-sanity-check" -> "#fastj2cgf-wf.cwl
|
|
179
|
sglf-sanity-check
|
|
180
|
log";
|
|
181
|
}
|
|
182
|
|
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183
|
subgraph cluster_3 {
|
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184
|
label="#main";
|
|
185
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node [style=filled];
|
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186
|
shape=box
|
|
187
|
style="filled";
|
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188
|
color="#dddddd";
|
|
189
|
"#main" [ label = "#main", style = invis ];
|
|
190
|
|
|
191
|
|
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192
|
"#main
|
|
193
|
fastj2cgf-wf
|
|
194
|
cgfdir" -> "step #main
|
|
195
|
check-cgf-gvcf-wf";
|
|
196
|
"#main
|
|
197
|
checknum" -> "step #main
|
|
198
|
check-cgf-gvcf-wf";
|
|
199
|
"#main
|
|
200
|
checkchroms" -> "step #main
|
|
201
|
check-cgf-gvcf-wf";
|
|
202
|
"#main
|
|
203
|
gvcfdir" -> "step #main
|
|
204
|
check-cgf-gvcf-wf";
|
|
205
|
"#main
|
|
206
|
ref" -> "step #main
|
|
207
|
check-cgf-gvcf-wf";
|
|
208
|
"#main
|
|
209
|
reffa" -> "step #main
|
|
210
|
check-cgf-gvcf-wf";
|
|
211
|
"#main
|
|
212
|
fastj2cgf-wf
|
|
213
|
lib" -> "step #main
|
|
214
|
check-cgf-gvcf-wf";
|
|
215
|
"#main
|
|
216
|
afn" -> "step #main
|
|
217
|
check-cgf-gvcf-wf";
|
|
218
|
"step #main
|
|
219
|
check-cgf-gvcf-wf" -> "#main
|
|
220
|
check-cgf-gvcf-wf
|
|
221
|
gvcfhashes";
|
|
222
|
"#main
|
|
223
|
fastj2cgf-wf
|
|
224
|
cgfdir" -> "step #main
|
|
225
|
createnpy-wf";
|
|
226
|
"#main
|
|
227
|
check-cgf-gvcf-wf
|
|
228
|
gvcfhashes" -> "step #main
|
|
229
|
createnpy-wf";
|
|
230
|
"step #main
|
|
231
|
createnpy-wf" -> "#main
|
|
232
|
createnpy-wf
|
|
233
|
consolnpydir";
|
|
234
|
"step #main
|
|
235
|
createnpy-wf" -> "#main
|
|
236
|
createnpy-wf
|
|
237
|
names";
|
|
238
|
"#main
|
|
239
|
fjdir" -> "step #main
|
|
240
|
fastj2cgf-wf";
|
|
241
|
"#main
|
|
242
|
nchunks" -> "step #main
|
|
243
|
fastj2cgf-wf";
|
|
244
|
"#main
|
|
245
|
pathmax" -> "step #main
|
|
246
|
fastj2cgf-wf";
|
|
247
|
"#main
|
|
248
|
pathmin" -> "step #main
|
|
249
|
fastj2cgf-wf";
|
|
250
|
"#main
|
|
251
|
sglfthreshold" -> "step #main
|
|
252
|
fastj2cgf-wf";
|
|
253
|
"#main
|
|
254
|
srclib" -> "step #main
|
|
255
|
fastj2cgf-wf";
|
|
256
|
"#main
|
|
257
|
tagset" -> "step #main
|
|
258
|
fastj2cgf-wf";
|
|
259
|
"step #main
|
|
260
|
fastj2cgf-wf" -> "#main
|
|
261
|
fastj2cgf-wf
|
|
262
|
lib";
|
|
263
|
"step #main
|
|
264
|
fastj2cgf-wf" -> "#main
|
|
265
|
fastj2cgf-wf
|
|
266
|
sglfsize";
|
|
267
|
"step #main
|
|
268
|
fastj2cgf-wf" -> "#main
|
|
269
|
fastj2cgf-wf
|
|
270
|
skippaths";
|
|
271
|
"step #main
|
|
272
|
fastj2cgf-wf" -> "#main
|
|
273
|
fastj2cgf-wf
|
|
274
|
cgfdir";
|
|
275
|
}
|
|
276
|
|
|
277
|
subgraph cluster_4 {
|
|
278
|
label="#createnpy-wf.cwl";
|
|
279
|
node [style=filled];
|
|
280
|
shape=box
|
|
281
|
style="filled";
|
|
282
|
color="#dddddd";
|
|
283
|
"#createnpy-wf.cwl" [ label = "#createnpy-wf.cwl", style = invis ];
|
|
284
|
|
|
285
|
|
|
286
|
"#createnpy-wf.cwl
|
|
287
|
createnpy
|
|
288
|
npydir" -> "step #createnpy-wf.cwl
|
|
289
|
consolnpy";
|
|
290
|
"step #createnpy-wf.cwl
|
|
291
|
consolnpy" -> "#createnpy-wf.cwl
|
|
292
|
consolnpy
|
|
293
|
consolnpydir";
|
|
294
|
"#createnpy-wf.cwl
|
|
295
|
cgfdir" -> "step #createnpy-wf.cwl
|
|
296
|
createnpy";
|
|
297
|
"step #createnpy-wf.cwl
|
|
298
|
createnpy" -> "#createnpy-wf.cwl
|
|
299
|
createnpy
|
|
300
|
npydir";
|
|
301
|
"step #createnpy-wf.cwl
|
|
302
|
createnpy" -> "#createnpy-wf.cwl
|
|
303
|
createnpy
|
|
304
|
names";
|
|
305
|
}
|
|
306
|
|
|
307
|
subgraph cluster_5 {
|
|
308
|
label="#createsglf-wf.cwl";
|
|
309
|
node [style=filled];
|
|
310
|
shape=box
|
|
311
|
style="filled";
|
|
312
|
color="#dddddd";
|
|
313
|
"#createsglf-wf.cwl" [ label = "#createsglf-wf.cwl", style = invis ];
|
|
314
|
|
|
315
|
|
|
316
|
"#createsglf-wf.cwl
|
|
317
|
fjdir" -> "step #createsglf-wf.cwl
|
|
318
|
createsglf";
|
|
319
|
"#createsglf-wf.cwl
|
|
320
|
tagset" -> "step #createsglf-wf.cwl
|
|
321
|
createsglf";
|
|
322
|
"#createsglf-wf.cwl
|
|
323
|
getpaths
|
|
324
|
maxpaths" -> "step #createsglf-wf.cwl
|
|
325
|
createsglf";
|
|
326
|
"#createsglf-wf.cwl
|
|
327
|
getpaths
|
|
328
|
minpaths" -> "step #createsglf-wf.cwl
|
|
329
|
createsglf";
|
|
330
|
"step #createsglf-wf.cwl
|
|
331
|
createsglf" -> "#createsglf-wf.cwl
|
|
332
|
createsglf
|
|
333
|
chunksglfs";
|
|
334
|
"#createsglf-wf.cwl
|
|
335
|
nchunks" -> "step #createsglf-wf.cwl
|
|
336
|
getpaths";
|
|
337
|
"#createsglf-wf.cwl
|
|
338
|
pathmax" -> "step #createsglf-wf.cwl
|
|
339
|
getpaths";
|
|
340
|
"#createsglf-wf.cwl
|
|
341
|
pathmin" -> "step #createsglf-wf.cwl
|
|
342
|
getpaths";
|
|
343
|
"step #createsglf-wf.cwl
|
|
344
|
getpaths" -> "#createsglf-wf.cwl
|
|
345
|
getpaths
|
|
346
|
minpaths";
|
|
347
|
"step #createsglf-wf.cwl
|
|
348
|
getpaths" -> "#createsglf-wf.cwl
|
|
349
|
getpaths
|
|
350
|
maxpaths";
|
|
351
|
}
|
|
352
|
|
|
353
|
|
|
354
|
|
|
355
|
"step #createcgf-wf.cwl
|
|
356
|
createcgf" [fillcolor="#FFD700", style="rounded,filled", shape=box];
|
|
357
|
"step #createcgf-wf.cwl
|
|
358
|
getdirs" [fillcolor="#FFD700", style="rounded,filled", shape=box];
|
|
359
|
"#createcgf.cwl" [fillcolor="#FF9912", style="rounded,filled", shape=box];
|
|
360
|
"#getdirs.cwl" [fillcolor="#D7D7EE", style="rounded,filled", shape=box];
|
|
361
|
"step #check-cgf-gvcf-wf.cwl
|
|
362
|
check-cgf-gvcf" [fillcolor="#FFD700", style="rounded,filled", shape=box];
|
|
363
|
"#check-cgf-gvcf.cwl" [fillcolor="#FF9912", style="rounded,filled", shape=box];
|
|
364
|
"#getsglfsize.cwl" [fillcolor="#FF9912", style="rounded,filled", shape=box];
|
|
365
|
"#sglf-sanity-check.cwl" [fillcolor="#FF9912", style="rounded,filled", shape=box];
|
|
366
|
"#array-to-dir.cwl" [fillcolor="#D7D7EE", style="rounded,filled", shape=box];
|
|
367
|
"#nestedarray-to-dir.cwl" [fillcolor="#D7D7EE", style="rounded,filled", shape=box];
|
|
368
|
"step #fastj2cgf-wf.cwl
|
|
369
|
createcgf-wf" [fillcolor="#FFD700", style="rounded,filled", shape=box];
|
|
370
|
"step #fastj2cgf-wf.cwl
|
|
371
|
createsglf-wf" [fillcolor="#FFD700", style="rounded,filled", shape=box];
|
|
372
|
"step #fastj2cgf-wf.cwl
|
|
373
|
getsglfsize" [fillcolor="#FFD700", style="rounded,filled", shape=box];
|
|
374
|
"step #fastj2cgf-wf.cwl
|
|
375
|
handle-cgfs" [fillcolor="#FFD700", style="rounded,filled", shape=box];
|
|
376
|
"step #fastj2cgf-wf.cwl
|
|
377
|
handle-sglfs" [fillcolor="#FFD700", style="rounded,filled", shape=box];
|
|
378
|
"step #fastj2cgf-wf.cwl
|
|
379
|
merge-tilelib" [fillcolor="#FFD700", style="rounded,filled", shape=box];
|
|
380
|
"step #fastj2cgf-wf.cwl
|
|
381
|
sglf-sanity-check" [fillcolor="#FFD700", style="rounded,filled", shape=box];
|
|
382
|
"step #main
|
|
383
|
check-cgf-gvcf-wf" [fillcolor="#FFD700", style="rounded,filled", shape=box];
|
|
384
|
"step #main
|
|
385
|
createnpy-wf" [fillcolor="#FFD700", style="rounded,filled", shape=box];
|
|
386
|
"step #main
|
|
387
|
fastj2cgf-wf" [fillcolor="#FFD700", style="rounded,filled", shape=box];
|
|
388
|
"#consolnpy.cwl" [fillcolor="#FF9912", style="rounded,filled", shape=box];
|
|
389
|
"step #createnpy-wf.cwl
|
|
390
|
consolnpy" [fillcolor="#FFD700", style="rounded,filled", shape=box];
|
|
391
|
"step #createnpy-wf.cwl
|
|
392
|
createnpy" [fillcolor="#FFD700", style="rounded,filled", shape=box];
|
|
393
|
"#createnpy.cwl" [fillcolor="#FF9912", style="rounded,filled", shape=box];
|
|
394
|
"step #createsglf-wf.cwl
|
|
395
|
createsglf" [fillcolor="#FFD700", style="rounded,filled", shape=box];
|
|
396
|
"step #createsglf-wf.cwl
|
|
397
|
getpaths" [fillcolor="#FFD700", style="rounded,filled", shape=box];
|
|
398
|
"#createsglf.cwl" [fillcolor="#FF9912", style="rounded,filled", shape=box];
|
|
399
|
"#getpaths.cwl" [fillcolor="#D7D7EE", style="rounded,filled", shape=box];
|
|
400
|
"#merge-tilelib.cwl" [fillcolor="#FF9912", style="rounded,filled", shape=box];
|
|
401
|
|
|
402
|
|
|
403
|
"step #createcgf-wf.cwl
|
|
404
|
createcgf" -> "#createcgf.cwl" [label="runs", style="dashed"];
|
|
405
|
"step #createcgf-wf.cwl
|
|
406
|
getdirs" -> "#getdirs.cwl" [label="runs", style="dashed"];
|
|
407
|
"step #check-cgf-gvcf-wf.cwl
|
|
408
|
check-cgf-gvcf" -> "#check-cgf-gvcf.cwl" [label="runs", style="dashed"];
|
|
409
|
"step #fastj2cgf-wf.cwl
|
|
410
|
createcgf-wf" -> "#createcgf-wf.cwl" [label="runs", style="dashed", lhead="cluster_0",label=" "];
|
|
411
|
"step #fastj2cgf-wf.cwl
|
|
412
|
createsglf-wf" -> "#createsglf-wf.cwl" [label="runs", style="dashed"];
|
|
413
|
"step #fastj2cgf-wf.cwl
|
|
414
|
getsglfsize" -> "#getsglfsize.cwl" [label="runs", style="dashed"];
|
|
415
|
"step #fastj2cgf-wf.cwl
|
|
416
|
handle-cgfs" -> "#array-to-dir.cwl" [label="runs", style="dashed"];
|
|
417
|
"step #fastj2cgf-wf.cwl
|
|
418
|
handle-sglfs" -> "#nestedarray-to-dir.cwl" [label="runs", style="dashed"];
|
|
419
|
"step #fastj2cgf-wf.cwl
|
|
420
|
merge-tilelib" -> "#merge-tilelib.cwl" [label="runs", style="dashed"];
|
|
421
|
"step #fastj2cgf-wf.cwl
|
|
422
|
sglf-sanity-check" -> "#sglf-sanity-check.cwl" [label="runs", style="dashed"];
|
|
423
|
"step #main
|
|
424
|
check-cgf-gvcf-wf" -> "#check-cgf-gvcf-wf.cwl" [label="runs", style="dashed", lhead="cluster_1",label=" "];
|
|
425
|
"step #main
|
|
426
|
createnpy-wf" -> "#createnpy-wf.cwl" [label="runs", style="dashed"];
|
|
427
|
"step #main
|
|
428
|
fastj2cgf-wf" -> "#fastj2cgf-wf.cwl" [label="runs", style="dashed", lhead="cluster_2",label=" "];
|
|
429
|
"step #createnpy-wf.cwl
|
|
430
|
consolnpy" -> "#consolnpy.cwl" [label="runs", style="dashed"];
|
|
431
|
"step #createnpy-wf.cwl
|
|
432
|
createnpy" -> "#createnpy.cwl" [label="runs", style="dashed"];
|
|
433
|
"step #createsglf-wf.cwl
|
|
434
|
createsglf" -> "#createsglf.cwl" [label="runs", style="dashed"];
|
|
435
|
"step #createsglf-wf.cwl
|
|
436
|
getpaths" -> "#getpaths.cwl" [label="runs", style="dashed"];
|
|
437
|
}
|
