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Bug #17175 ยป arvados-failed.log

Lucas Di Pentima, 12/01/2020 09:46 PM

 
1
{"PID":16970,"command":"[git diff --shortstat]","dir":".","level":"info","msg":"executing","time":"2020-11-05T17:29:57.027654808-03:00"}
2
{"PID":16970,"command":"[git log -n1 --format=%H]","dir":".","level":"info","msg":"executing","time":"2020-11-05T17:30:01.577190232-03:00"}
3
{"PID":16970,"command":"[go install -ldflags -X git.arvados.org/arvados.git/lib/cmd.version=077e8c70a8f541ae85cb98805ca6f48a693dd767 -X main.version=077e8c70a8f541ae85cb98805ca6f48a693dd767]","dir":"/media/psf/arvados/cmd/arvados-server","level":"info","msg":"executing","time":"2020-11-05T17:30:01.627119047-03:00"}
4
{"PID":16970,"level":"info","msg":"waiting","task":"certificates","time":"2020-11-05T17:30:08.050917972-03:00"}
5
{"PID":16970,"level":"info","msg":"starting","task":"keepproxy","time":"2020-11-05T17:30:08.050948377-03:00"}
6
{"PID":16970,"level":"info","msg":"starting","task":"seedDatabase","time":"2020-11-05T17:30:08.051050249-03:00"}
7
{"PID":16970,"level":"info","msg":"waiting","task":"postgresql","time":"2020-11-05T17:30:08.057447044-03:00"}
8
{"PID":16970,"command":"[go install -ldflags -X git.arvados.org/arvados.git/lib/cmd.version=077e8c70a8f541ae85cb98805ca6f48a693dd767 -X main.version=077e8c70a8f541ae85cb98805ca6f48a693dd767]","dir":"/media/psf/arvados/services/keepproxy","level":"info","msg":"executing","time":"2020-11-05T17:30:08.056727410-03:00"}
9
{"PID":16970,"level":"info","msg":"starting","task":"certificates","time":"2020-11-05T17:30:08.050971149-03:00"}
10
{"PID":16970,"command":"[openssl genrsa -out rootCA.key 4096]","dir":"/tmp/arvados-server-boot-420120283","level":"info","msg":"executing","time":"2020-11-05T17:30:08.057969690-03:00"}
11
{"PID":16970,"level":"info","msg":"starting","task":"postgresql","time":"2020-11-05T17:30:08.050975488-03:00"}
12
{"PID":16970,"level":"info","msg":"waiting","task":"certificates","time":"2020-11-05T17:30:08.058326593-03:00"}
13
{"PID":16970,"level":"info","msg":"starting","task":"nginx","time":"2020-11-05T17:30:08.050979342-03:00"}
14
{"PID":16970,"level":"info","msg":"starting","task":"controller","time":"2020-11-05T17:30:08.050983164-03:00"}
15
{"PID":16970,"command":"[/tmp/arvados-server-boot-420120283/bin/arvados-server -version]","dir":"/tmp/arvados-server-boot-420120283","level":"info","msg":"executing","time":"2020-11-05T17:30:08.059060138-03:00"}
16
{"PID":16970,"level":"info","msg":"waiting","task":"certificates","time":"2020-11-05T17:30:08.059221815-03:00"}
17
{"PID":16970,"level":"info","msg":"starting","task":"arv-git-httpd","time":"2020-11-05T17:30:08.050987194-03:00"}
18
{"PID":16970,"command":"[go install -ldflags -X git.arvados.org/arvados.git/lib/cmd.version=077e8c70a8f541ae85cb98805ca6f48a693dd767 -X main.version=077e8c70a8f541ae85cb98805ca6f48a693dd767]","dir":"/media/psf/arvados/services/arv-git-httpd","level":"info","msg":"executing","time":"2020-11-05T17:30:08.059899743-03:00"}
19
{"PID":16970,"level":"info","msg":"starting","task":"health","time":"2020-11-05T17:30:08.050991058-03:00"}
20
{"PID":16970,"command":"[go install -ldflags -X git.arvados.org/arvados.git/lib/cmd.version=077e8c70a8f541ae85cb98805ca6f48a693dd767 -X main.version=077e8c70a8f541ae85cb98805ca6f48a693dd767]","dir":"/media/psf/arvados/services/health","level":"info","msg":"executing","time":"2020-11-05T17:30:08.060396070-03:00"}
21
{"PID":16970,"level":"info","msg":"starting","task":"installPassenger:services/api","time":"2020-11-05T17:30:08.051001023-03:00"}
22
{"PID":16970,"command":"[gem list --details bundler]","dir":"services/api","level":"info","msg":"executing","time":"2020-11-05T17:30:08.060896638-03:00"}
23
{"PID":16970,"level":"info","msg":"starting","task":"keepstore","time":"2020-11-05T17:30:08.051009806-03:00"}
24
{"PID":16970,"command":"[go install -ldflags -X git.arvados.org/arvados.git/lib/cmd.version=077e8c70a8f541ae85cb98805ca6f48a693dd767 -X main.version=077e8c70a8f541ae85cb98805ca6f48a693dd767]","dir":"/media/psf/arvados/services/keepstore","level":"info","msg":"executing","time":"2020-11-05T17:30:08.061752577-03:00"}
25
{"PID":16970,"level":"info","msg":"starting","task":"keep-web","time":"2020-11-05T17:30:08.051013828-03:00"}
26
{"PID":16970,"command":"[go install -ldflags -X git.arvados.org/arvados.git/lib/cmd.version=077e8c70a8f541ae85cb98805ca6f48a693dd767 -X main.version=077e8c70a8f541ae85cb98805ca6f48a693dd767]","dir":"/media/psf/arvados/services/keep-web","level":"info","msg":"executing","time":"2020-11-05T17:30:08.062259029-03:00"}
27
{"PID":16970,"level":"info","msg":"starting","task":"ws","time":"2020-11-05T17:30:08.051018014-03:00"}
28
{"PID":16970,"command":"[/tmp/arvados-server-boot-420120283/bin/arvados-server -version]","dir":"/tmp/arvados-server-boot-420120283","level":"info","msg":"executing","time":"2020-11-05T17:30:08.062771416-03:00"}
29
{"PID":16970,"level":"info","msg":"starting","task":"installPassenger:apps/workbench","time":"2020-11-05T17:30:08.051027671-03:00"}
30
{"PID":16970,"level":"info","msg":"waiting","task":"installPassenger:services/api","time":"2020-11-05T17:30:08.063035683-03:00"}
31
{"PID":16970,"level":"info","msg":"starting","task":"runPassenger:services/api","time":"2020-11-05T17:30:08.051031481-03:00"}
32
{"PID":16970,"level":"info","msg":"waiting","task":"certificates","time":"2020-11-05T17:30:08.063158716-03:00"}
33
{"PID":16970,"level":"info","msg":"starting","task":"runPassenger:apps/workbench","time":"2020-11-05T17:30:08.051040808-03:00"}
34
{"PID":16970,"level":"info","msg":"waiting","task":"installPassenger:apps/workbench","time":"2020-11-05T17:30:08.063296541-03:00"}
35
[openssl] Generating RSA private key, 4096 bit long modulus (2 primes)
36
[openssl] ..[arvados-server] /tmp/arvados-server-boot-420120283/bin/arvados-server 077e8c70a8f541ae85cb98805ca6f48a693dd767 (go1.14)
37
{"PID":16970,"level":"info","msg":"waiting","task":"postgresql","time":"2020-11-05T17:30:08.096089640-03:00"}
38
..[arvados-server] /tmp/arvados-server-boot-420120283/bin/arvados-server 077e8c70a8f541ae85cb98805ca6f48a693dd767 (go1.14)
39
{"PID":16970,"level":"info","msg":"waiting","task":"postgresql","time":"2020-11-05T17:30:08.179014019-03:00"}
40
........................................................................++++
41
[openssl] ...{"PID":16970,"command":"[bundle install --jobs 4 --path /root/.gem]","dir":"services/api","level":"info","msg":"executing","time":"2020-11-05T17:30:10.281369319-03:00"}
42
................++++
43
[openssl] e is 65537 (0x010001)
44
{"PID":16970,"command":"[openssl req -x509 -new -nodes -key rootCA.key -sha256 -days 3650 -out rootCA.crt -subj /C=US/ST=MA/O=Example Org/CN=localhost]","dir":"/tmp/arvados-server-boot-420120283","level":"info","msg":"executing","time":"2020-11-05T17:30:10.633065374-03:00"}
45
{"PID":16970,"command":"[openssl genrsa -out server.key 2048]","dir":"/tmp/arvados-server-boot-420120283","level":"info","msg":"executing","time":"2020-11-05T17:30:10.698585748-03:00"}
46
[openssl] Generating RSA private key, 2048 bit long modulus (2 primes)
47
[openssl] ......................................+++++
48
[openssl] ..................................................[services/api: bundle] Don't run Bundler as root. Bundler can ask for sudo if it is needed, and installing your bundle as root will break this application for all non-root users on this machine.
49
..........+++++
50
[openssl] e is 65537 (0x010001)
51
{"PID":16970,"command":"[openssl req -new -sha256 -key server.key -subj /C=US/ST=MA/O=Example Org/CN=localhost -reqexts SAN -config server.cfg -out server.csr]","dir":"/tmp/arvados-server-boot-420120283","level":"info","msg":"executing","time":"2020-11-05T17:30:11.228777557-03:00"}
52
{"PID":16970,"command":"[openssl x509 -req -in server.csr -CA rootCA.crt -CAkey rootCA.key -CAcreateserial -out server.crt -extfile server.cfg -extensions SAN -days 3650 -sha256]","dir":"/tmp/arvados-server-boot-420120283","level":"info","msg":"executing","time":"2020-11-05T17:30:11.273594854-03:00"}
53
[openssl] Signature ok
54
[openssl] subject=C = US, ST = MA, O = Example Org, CN = localhost
55
[openssl] Getting CA Private Key
56
{"PID":16970,"level":"info","msg":"ready","task":"certificates","time":"2020-11-05T17:30:11.341592002-03:00"}
57
{"PID":16970,"level":"info","msg":"waiting","task":"postgresql","time":"2020-11-05T17:30:11.341808604-03:00"}
58
{"PID":16970,"level":"info","msg":"ready","task":"certificates","time":"2020-11-05T17:30:11.341693902-03:00"}
59
{"PID":16970,"level":"info","msg":"ready","task":"certificates","time":"2020-11-05T17:30:11.341697385-03:00"}
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{"PID":16970,"level":"info","msg":"waiting","task":"postgresql","time":"2020-11-05T17:30:11.342239082-03:00"}
61
{"PID":16970,"level":"info","msg":"ready","task":"certificates","time":"2020-11-05T17:30:11.341706276-03:00"}
62
{"PID":16970,"command":"[pg_config --bindir]","dir":"/tmp/arvados-server-boot-420120283","level":"info","msg":"executing","time":"2020-11-05T17:30:11.342483811-03:00"}
63
{"PID":16970,"command":"[nginx -g error_log stderr info; -g pid /tmp/arvados-server-boot-420120283/nginx.pid; -c /tmp/arvados-server-boot-420120283/nginx.conf]","dir":".","level":"info","msg":"executing","time":"2020-11-05T17:30:11.343755787-03:00"}
64
{"PID":16970,"command":"[setuidgid postgres /usr/lib/postgresql/11/bin/initdb -D /tmp/arvados-server-boot-420120283/pgdata -E utf8]","dir":"/tmp/arvados-server-boot-420120283","level":"info","msg":"executing","time":"2020-11-05T17:30:11.384329614-03:00"}
65
[-D] The files belonging to this database system will be owned by user "postgres".
66
[-D] This user must also own the server process.
67
[-D] 
68
[-D] The database cluster will be initialized with locale "en_US.UTF-8".
69
[-D] The default text search configuration will be set to "english".
70
[-D] 
71
[-D] Data page checksums are disabled.
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[-D] 
73
[-D] fixing permissions on existing directory /tmp/arvados-server-boot-420120283/pgdata ... ok
74
[-D] creating subdirectories ... ok
75
[-D] selecting default max_connections ... 100
76
[-D] selecting default shared_buffers ... 128MB
77
[-D] selecting default timezone ... [services/api: bundle] Using rake 13.0.1
78
[services/api: bundle] Using concurrent-ruby 1.1.6
79
[services/api: bundle] Using i18n 0.9.5
80
[services/api: bundle] Using minitest 5.10.3
81
[services/api: bundle] Using thread_safe 0.3.6
82
[services/api: bundle] Using tzinfo 1.2.7
83
[services/api: bundle] Using activesupport 5.2.4.3
84
[services/api: bundle] Using builder 3.2.4
85
[services/api: bundle] Using erubi 1.9.0
86
[services/api: bundle] Using mini_portile2 2.4.0
87
[services/api: bundle] Using nokogiri 1.10.10
88
[services/api: bundle] Using rails-dom-testing 2.0.3
89
[services/api: bundle] Using crass 1.0.6
90
[services/api: bundle] Using loofah 2.6.0
91
[services/api: bundle] Using rails-html-sanitizer 1.3.0
92
[services/api: bundle] Using actionview 5.2.4.3
93
[services/api: bundle] Using rack 2.2.3
94
[services/api: bundle] Using rack-test 1.1.0
95
[services/api: bundle] Using actionpack 5.2.4.3
96
[services/api: bundle] Using nio4r 2.5.2
97
[services/api: bundle] Using websocket-extensions 0.1.5
98
[services/api: bundle] Using websocket-driver 0.7.3
99
[services/api: bundle] Using actioncable 5.2.4.3
100
[services/api: bundle] Using globalid 0.4.2
101
[services/api: bundle] Using activejob 5.2.4.3
102
[services/api: bundle] Using mini_mime 1.0.2
103
[services/api: bundle] Using mail 2.7.1
104
[services/api: bundle] Using actionmailer 5.2.4.3
105
[services/api: bundle] Using activemodel 5.2.4.3
106
[services/api: bundle] Using arel 9.0.0
107
[services/api: bundle] Using activerecord 5.2.4.3
108
[services/api: bundle] Using mimemagic 0.3.5
109
[services/api: bundle] Using marcel 0.3.3
110
[services/api: bundle] Using activestorage 5.2.4.3
111
[services/api: bundle] Using acts_as_api 1.0.1
112
[services/api: bundle] Using public_suffix 4.0.3
113
[services/api: bundle] Using addressable 2.7.0
114
[services/api: bundle] Using andand 1.3.3
115
[services/api: bundle] Using extlib 0.9.16
116
[services/api: bundle] Using multi_json 1.14.1
117
[services/api: bundle] Using autoparse 0.3.3
118
[services/api: bundle] Using multipart-post 2.1.1
119
[services/api: bundle] Using faraday 0.15.4
120
[services/api: bundle] Using jwt 1.5.6
121
[services/api: bundle] Using memoist 0.16.2
122
[services/api: bundle] Using os 1.0.1
123
[services/api: bundle] Using signet 0.11.0
124
[services/api: bundle] Using googleauth 0.9.0
125
[services/api: bundle] Using launchy 2.4.3
126
[services/api: bundle] Using retriable 1.4.1
127
[services/api: bundle] Using arvados-google-api-client 0.8.7.4
128
[services/api: bundle] Using json 2.3.0
129
[services/api: bundle] Using arvados 1.5.0.pre20200114202620 from https://github.com/arvados/arvados.git (at /media/psf/arvados/services/api/vendor/cache/arvados-81725af5d5d2@81725af)
130
[services/api: bundle] Using msgpack 1.3.3
131
[services/api: bundle] Using bootsnap 1.4.7
132
[services/api: bundle] Using bundler 1.17.3
133
[services/api: bundle] Using byebug 11.0.1
134
[services/api: bundle] Using highline 2.0.1
135
[services/api: bundle] Using net-ssh 5.2.0
136
[services/api: bundle] Using net-scp 2.0.0
137
[services/api: bundle] Using net-sftp 2.1.2
138
[services/api: bundle] Using net-ssh-gateway 2.0.0
139
[services/api: bundle] Using capistrano 2.15.9
140
[services/api: bundle] Using execjs 2.7.0
141
[services/api: bundle] Using factory_bot 5.0.2
142
[services/api: bundle] Using method_source 1.0.0
143
[services/api: bundle] Using thor 1.0.1
144
[services/api: bundle] Using railties 5.2.4.3
145
[services/api: bundle] Using factory_bot_rails 5.0.1
146
[services/api: bundle] Using ffi 1.9.25
147
[services/api: bundle] Using hashie 3.6.0
148
[services/api: bundle] Using httpclient 2.8.3
149
[services/api: bundle] Using jquery-rails 4.3.3
150
[services/api: bundle] Using libv8 3.16.14.19 (x86_64-linux)
151
[services/api: bundle] Using rb-fsevent 0.10.3
152
[services/api: bundle] Using rb-inotify 0.9.10
153
[services/api: bundle] Using listen 3.2.1
154
[services/api: bundle] Using request_store 1.4.1
155
[services/api: bundle] Using lograge 0.10.0
156
[services/api: bundle] Using logstash-event 1.2.02
157
[services/api: bundle] Using metaclass 0.0.4
158
[services/api: bundle] Using mocha 1.8.0
159
[services/api: bundle] Using multi_xml 0.6.0
160
[services/api: bundle] Using oauth2 1.4.1
161
[services/api: bundle] Using oj 3.9.2
162
[services/api: bundle] Using omniauth 1.4.3
163
[services/api: bundle] Using omniauth-oauth2 1.5.0
164
[services/api: bundle] Using optimist 3.0.0
165
[services/api: bundle] Using passenger 6.0.2
166
[services/api: bundle] Using pg 1.1.4
167
[services/api: bundle] Using power_assert 1.1.4
168
[services/api: bundle] Using sprockets 3.7.2
169
[services/api: bundle] Using sprockets-rails 3.2.1
170
[services/api: bundle] Using rails 5.2.4.3
171
[services/api: bundle] Using rails-controller-testing 1.0.4
172
[services/api: bundle] Using rails-observers 0.1.5
173
[services/api: bundle] Using rails-perftest 0.0.7
174
[services/api: bundle] Using ref 2.0.0
175
[services/api: bundle] Using responders 2.4.1
176
[services/api: bundle] Using ruby-prof 0.15.9
177
[services/api: bundle] Using rvm-capistrano 1.5.6
178
[services/api: bundle] Using safe_yaml 1.0.5
179
[services/api: bundle] Using sass-listen 4.0.0
180
[services/api: bundle] Using sass 3.5.5
181
[services/api: bundle] Using tilt 2.0.8
182
[services/api: bundle] Using sass-rails 5.0.7
183
[services/api: bundle] Using simplecov-html 0.7.1
184
[services/api: bundle] Using simplecov 0.7.1
185
[services/api: bundle] Using simplecov-rcov 0.2.3
186
[services/api: bundle] Using sshkey 2.0.0
187
[services/api: bundle] Using test-unit 3.3.1
188
[services/api: bundle] Using themes_for_rails 0.5.1 from https://github.com/arvados/themes_for_rails (at /media/psf/arvados/services/api/vendor/cache/themes_for_rails-ddf6e592b3b6@ddf6e59)
189
[services/api: bundle] Using therubyracer 0.12.3
190
[services/api: bundle] Using uglifier 2.7.2
191
America/Cordoba
192
[-D] selecting dynamic shared memory implementation ... posix
193
[-D] creating configuration files ... ok
194
[-D] running bootstrap script ... [services/api: bundle] Updating files in vendor/cache
195
ok
196
[-D] performing post-bootstrap initialization ... {"PID":16970,"command":"[/tmp/arvados-server-boot-420120283/bin/keepproxy -version]","dir":"/tmp/arvados-server-boot-420120283","level":"info","msg":"executing","time":"2020-11-05T17:30:12.989625261-03:00"}
197
[keepproxy] keepproxy 077e8c70a8f541ae85cb98805ca6f48a693dd767
198
{"PID":16970,"level":"info","msg":"waiting","task":"runPassenger:services/api","time":"2020-11-05T17:30:13.029875106-03:00"}
199
{"PID":16970,"command":"[/tmp/arvados-server-boot-420120283/bin/arv-git-httpd -version]","dir":"/tmp/arvados-server-boot-420120283","level":"info","msg":"executing","time":"2020-11-05T17:30:13.102253408-03:00"}
200
{"PID":16970,"command":"[/tmp/arvados-server-boot-420120283/bin/health -version]","dir":"/tmp/arvados-server-boot-420120283","level":"info","msg":"executing","time":"2020-11-05T17:30:13.103330218-03:00"}
201
[health] /tmp/arvados-server-boot-420120283/bin/health 077e8c70a8f541ae85cb98805ca6f48a693dd767 (go1.14)
202
{"PID":16970,"command":"[/tmp/arvados-server-boot-420120283/bin/health]","dir":"/tmp/arvados-server-boot-420120283","level":"info","msg":"executing","time":"2020-11-05T17:30:13.118002864-03:00"}
203
[arv-git-httpd] arv-git-httpd 077e8c70a8f541ae85cb98805ca6f48a693dd767
204
{"PID":16970,"command":"[/tmp/arvados-server-boot-420120283/bin/arv-git-httpd]","dir":"/tmp/arvados-server-boot-420120283","level":"info","msg":"executing","time":"2020-11-05T17:30:13.118821995-03:00"}
205
[arv-git-httpd] {"level":"info","msg":"arv-git-httpd 077e8c70a8f541ae85cb98805ca6f48a693dd767 started","time":"2020-11-05T17:30:13.163768361-03:00"}
206
[arv-git-httpd] {"level":"info","msg":"Listening at 127.0.0.1:37225","time":"2020-11-05T17:30:13.163807839-03:00"}
207
[arv-git-httpd] {"level":"info","msg":"Repository root /var/lib/arvados/git/repositories","time":"2020-11-05T17:30:13.163814735-03:00"}
208
[health] {"Listen":"127.0.0.1:36337","PID":17304,"Service":"arvados-health","URL":"http://localhost:36337/","level":"info","msg":"listening","time":"2020-11-05T17:30:13.174542815-03:00"}
209
{"PID":16970,"command":"[/tmp/arvados-server-boot-420120283/bin/keep-web -version]","dir":"/tmp/arvados-server-boot-420120283","level":"info","msg":"executing","time":"2020-11-05T17:30:13.588765316-03:00"}
210
[keep-web] keep-web 077e8c70a8f541ae85cb98805ca6f48a693dd767
211
{"PID":16970,"command":"[/tmp/arvados-server-boot-420120283/bin/keep-web]","dir":"/tmp/arvados-server-boot-420120283","level":"info","msg":"executing","time":"2020-11-05T17:30:13.624826905-03:00"}
212
[keep-web] {"level":"info","msg":"keep-web 077e8c70a8f541ae85cb98805ca6f48a693dd767 started","time":"2020-11-05T17:30:13.662763844-03:00"}
213
[keep-web] {"level":"info","msg":"Listening at 127.0.0.1:32871","time":"2020-11-05T17:30:13.679582238-03:00"}
214
ok
215
[-D] syncing data to disk ... {"PID":16970,"command":"[/tmp/arvados-server-boot-420120283/bin/keepstore -version]","dir":"/tmp/arvados-server-boot-420120283","level":"info","msg":"executing","time":"2020-11-05T17:30:14.282407250-03:00"}
216

    
217
[-D] WARNING: enabling "trust" authentication for local connections
218
[-D] You can change this by editing pg_hba.conf or using the option -A, or
219
[-D] --auth-local and --auth-host, the next time you run initdb.
220
[-D] ok
221
[-D] 
222
[-D] Success. You can now start the database server using:
223
[-D] 
224
[-D]     /usr/lib/postgresql/11/bin/pg_ctl -D /tmp/arvados-server-boot-420120283/pgdata -l logfile start
225
[-D] 
226
{"PID":16970,"command":"[cp server.crt server.key /tmp/arvados-server-boot-420120283/pgdata]","dir":"/tmp/arvados-server-boot-420120283","level":"info","msg":"executing","time":"2020-11-05T17:30:14.293653775-03:00"}
227
[keepstore] /tmp/arvados-server-boot-420120283/bin/keepstore 077e8c70a8f541ae85cb98805ca6f48a693dd767 (go1.14)
228
{"PID":16970,"command":"[/tmp/arvados-server-boot-420120283/bin/keepstore]","dir":"/tmp/arvados-server-boot-420120283","level":"info","msg":"executing","time":"2020-11-05T17:30:14.294372669-03:00"}
229
{"PID":16970,"command":"[/tmp/arvados-server-boot-420120283/bin/keepstore]","dir":"/tmp/arvados-server-boot-420120283","level":"info","msg":"executing","time":"2020-11-05T17:30:14.294689304-03:00"}
230
{"PID":16970,"command":"[chown postgres /tmp/arvados-server-boot-420120283/pgdata/server.crt /tmp/arvados-server-boot-420120283/pgdata/server.key]","dir":"/tmp/arvados-server-boot-420120283","level":"info","msg":"executing","time":"2020-11-05T17:30:14.296671637-03:00"}
231
{"PID":16970,"command":"[setuidgid postgres /usr/lib/postgresql/11/bin/postgres -l -D /tmp/arvados-server-boot-420120283/pgdata -k /tmp/arvados-server-boot-420120283/pgdata -p 44031]","dir":"/tmp/arvados-server-boot-420120283","level":"info","msg":"executing","time":"2020-11-05T17:30:14.303158718-03:00"}
232
[keepstore] {"PID":17333,"level":"info","msg":"keepstore 077e8c70a8f541ae85cb98805ca6f48a693dd767 starting, pid 17333","time":"2020-11-05T17:30:14.332316751-03:00"}
233
[keepstore] {"PID":17334,"level":"info","msg":"keepstore 077e8c70a8f541ae85cb98805ca6f48a693dd767 starting, pid 17334","time":"2020-11-05T17:30:14.334198102-03:00"}
234
[keepstore] {"PID":17334,"level":"info","msg":"started volume zzzzz-nyw5e-000000000000000 ([UnixVolume /tmp/arvados-server-boot-420120283/keep0.data]), ReadOnly=false","time":"2020-11-05T17:30:14.341364808-03:00"}
235
[-l] 2020-11-05 17:30:14.343 -03 [17350] LOG:  listening on IPv6 address "::1", port 44031
236
[-l] 2020-11-05 17:30:14.343 -03 [17350] LOG:  listening on IPv4 address "127.0.0.1", port 44031
237
[-l] 2020-11-05 17:30:14.345 -03 [17350] LOG:  listening on Unix socket "/tmp/arvados-server-boot-420120283/pgdata/.s.PGSQL.44031"
238
[keepstore] {"PID":17333,"level":"info","msg":"started volume zzzzz-nyw5e-000000000000001 ([UnixVolume /tmp/arvados-server-boot-420120283/keep1.data]), ReadOnly=false","time":"2020-11-05T17:30:14.348134185-03:00"}
239
[keepstore] {"Listen":"127.0.0.1:38899","PID":17334,"Service":"keepstore","URL":"http://localhost:38899/","level":"info","msg":"listening","time":"2020-11-05T17:30:14.349655053-03:00"}
240
[keepstore] {"Listen":"127.0.0.1:46137","PID":17333,"Service":"keepstore","URL":"http://localhost:46137/","level":"info","msg":"listening","time":"2020-11-05T17:30:14.355126160-03:00"}
241
[-l] 2020-11-05 17:30:14.367 -03 [17355] LOG:  database system was shut down at 2020-11-05 17:30:14 -03
242
[-l] 2020-11-05 17:30:14.371 -03 [17350] LOG:  database system is ready to accept connections
243
[-l] 2020-11-05 17:30:14.376 -03 [17356] FATAL:  the database system is starting up
244
[-l] 2020-11-05 17:30:14.378 -03 [17363] FATAL:  role "root" does not exist
245
{"PID":16970,"level":"info","msg":"ready","task":"postgresql","time":"2020-11-05T17:30:14.622653666-03:00"}
246
{"PID":16970,"level":"info","msg":"waiting","task":"installPassenger:services/api","time":"2020-11-05T17:30:14.624275078-03:00"}
247
{"PID":16970,"level":"info","msg":"ready","task":"postgresql","time":"2020-11-05T17:30:14.622707432-03:00"}
248
{"PID":16970,"command":"[/tmp/arvados-server-boot-420120283/bin/arvados-server controller -config /tmp/arvados-server-boot-420120283/config.yml]","dir":"/tmp/arvados-server-boot-420120283","level":"info","msg":"executing","time":"2020-11-05T17:30:14.624453567-03:00"}
249
{"PID":16970,"level":"info","msg":"ready","task":"postgresql","time":"2020-11-05T17:30:14.622689100-03:00"}
250
{"PID":16970,"level":"info","msg":"waiting","task":"installPassenger:services/api","time":"2020-11-05T17:30:14.624710881-03:00"}
251
{"PID":16970,"level":"info","msg":"ready","task":"postgresql","time":"2020-11-05T17:30:14.622698525-03:00"}
252
{"PID":16970,"level":"info","msg":"ready","task":"postgresql","time":"2020-11-05T17:30:14.622699936-03:00"}
253
{"PID":16970,"level":"info","msg":"waiting","task":"nginx","time":"2020-11-05T17:30:14.625271648-03:00"}
254
{"PID":16970,"level":"info","msg":"ready","task":"nginx","time":"2020-11-05T17:30:14.625490666-03:00"}
255
{"PID":16970,"level":"info","msg":"waiting","task":"controller","time":"2020-11-05T17:30:14.625604717-03:00"}
256
{"PID":16970,"level":"info","msg":"ready","task":"controller","time":"2020-11-05T17:30:14.625839183-03:00"}
257
{"PID":16970,"level":"info","msg":"waiting","task":"arv-git-httpd","time":"2020-11-05T17:30:14.625875460-03:00"}
258
{"PID":16970,"level":"info","msg":"ready","task":"arv-git-httpd","time":"2020-11-05T17:30:14.626009307-03:00"}
259
{"PID":16970,"level":"info","msg":"waiting","task":"health","time":"2020-11-05T17:30:14.626135387-03:00"}
260
{"PID":16970,"command":"[/tmp/arvados-server-boot-420120283/bin/arvados-server ws -config /tmp/arvados-server-boot-420120283/config.yml]","dir":"/tmp/arvados-server-boot-420120283","level":"info","msg":"executing","time":"2020-11-05T17:30:14.625087294-03:00"}
261
{"PID":16970,"level":"info","msg":"ready","task":"health","time":"2020-11-05T17:30:14.626324628-03:00"}
262
{"PID":16970,"level":"info","msg":"waiting","task":"keepproxy","time":"2020-11-05T17:30:14.626872527-03:00"}
263
[controller] {"Listen":"127.0.0.1:38437","PID":17365,"Service":"arvados-controller","URL":"http://localhost:38437/","level":"info","msg":"listening","time":"2020-11-05T17:30:14.684494616-03:00"}
264
[ws] {"Listen":"127.0.0.1:33185","PID":17366,"Service":"arvados-ws","URL":"http://localhost:33185/","level":"info","msg":"listening","time":"2020-11-05T17:30:14.693921421-03:00"}
265
[services/api: bundle] Bundle complete! 37 Gemfile dependencies, 114 gems now installed.
266
[services/api: bundle] Bundled gems are installed into `/root/.gem`
267
{"PID":16970,"command":"[bundle exec passenger-config build-native-support]","dir":"services/api","level":"info","msg":"executing","time":"2020-11-05T17:30:16.163907666-03:00"}
268
{"PID":16970,"command":"[bundle exec passenger-config install-standalone-runtime]","dir":"services/api","level":"info","msg":"executing","time":"2020-11-05T17:30:16.456894979-03:00"}
269
[services/api: passenger-config] The Phusion Passenger Standalone runtime is already installed.
270
[services/api: passenger-config] If you want to redownload it, re-run this program with the --force parameter.
271
{"PID":16970,"command":"[bundle exec passenger-config validate-install]","dir":"services/api","level":"info","msg":"executing","time":"2020-11-05T17:30:16.779542200-03:00"}
272
[services/api: passenger-config]  * Checking whether this Passenger install is in PATH... โœ“
273
[services/api: passenger-config]  * Checking whether there are no other Passenger installations... โœ“
274
[services/api: passenger-config] 
275
[services/api: passenger-config] Everything looks good. :-)
276
{"PID":16970,"level":"info","msg":"ready","task":"installPassenger:services/api","time":"2020-11-05T17:30:17.253288711-03:00"}
277
{"PID":16970,"command":"[gem list --details bundler]","dir":"apps/workbench","level":"info","msg":"executing","time":"2020-11-05T17:30:17.253897623-03:00"}
278
{"PID":16970,"level":"info","msg":"ready","task":"installPassenger:services/api","time":"2020-11-05T17:30:17.253315765-03:00"}
279
{"PID":16970,"level":"info","msg":"ready","task":"runPassenger:services/api","time":"2020-11-05T17:30:17.254685697-03:00"}
280
{"PID":16970,"level":"info","msg":"ready","task":"installPassenger:services/api","time":"2020-11-05T17:30:17.253326664-03:00"}
281
{"PID":16970,"command":"[bundle exec rake db:setup]","dir":"services/api","level":"info","msg":"executing","time":"2020-11-05T17:30:17.254968154-03:00"}
282
{"PID":16970,"command":"[/tmp/arvados-server-boot-420120283/bin/keepproxy]","dir":"/tmp/arvados-server-boot-420120283","level":"info","msg":"executing","time":"2020-11-05T17:30:17.254979948-03:00"}
283
{"PID":16970,"command":"[bundle exec passenger start -p 36571 --log-file /dev/stderr --log-level 4 --no-friendly-error-pages --pid-file /tmp/arvados-server-boot-420120283/passenger.services_api.pid]","dir":"services/api","level":"info","msg":"executing","time":"2020-11-05T17:30:17.254879090-03:00"}
284
{"PID":16970,"level":"info","msg":"ready","task":"keepproxy","time":"2020-11-05T17:30:17.254909724-03:00"}
285
{"PID":16970,"level":"info","msg":"waiting","task":"keepstore","time":"2020-11-05T17:30:17.256524040-03:00"}
286
{"PID":16970,"level":"info","msg":"ready","task":"keepstore","time":"2020-11-05T17:30:17.256693993-03:00"}
287
{"PID":16970,"level":"info","msg":"waiting","task":"keep-web","time":"2020-11-05T17:30:17.256836502-03:00"}
288
{"PID":16970,"level":"info","msg":"ready","task":"keep-web","time":"2020-11-05T17:30:17.256937287-03:00"}
289
{"PID":16970,"level":"info","msg":"waiting","task":"ws","time":"2020-11-05T17:30:17.257058414-03:00"}
290
{"PID":16970,"level":"info","msg":"ready","task":"ws","time":"2020-11-05T17:30:17.257171441-03:00"}
291
{"PID":16970,"level":"info","msg":"waiting","task":"installPassenger:services/api","time":"2020-11-05T17:30:17.257281687-03:00"}
292
{"PID":16970,"level":"info","msg":"ready","task":"installPassenger:services/api","time":"2020-11-05T17:30:17.257387801-03:00"}
293
{"PID":16970,"level":"info","msg":"waiting","task":"runPassenger:services/api","time":"2020-11-05T17:30:17.257719426-03:00"}
294
{"PID":16970,"level":"info","msg":"ready","task":"runPassenger:services/api","time":"2020-11-05T17:30:17.257840414-03:00"}
295
{"PID":16970,"level":"info","msg":"waiting","task":"installPassenger:apps/workbench","time":"2020-11-05T17:30:17.257945421-03:00"}
296
[keepproxy] time="2020-11-05T17:30:17-03:00" level=info msg="keepproxy 077e8c70a8f541ae85cb98805ca6f48a693dd767 started"
297
[controller] {"PID":17365,"RequestID":"req-1faj24x7ujqu81qpblhx","level":"info","msg":"request","remoteAddr":"127.0.0.1:33790","reqBytes":0,"reqForwardedFor":"127.0.0.1","reqHost":"localhost:40157","reqMethod":"GET","reqPath":"discovery/v1/apis/arvados/v1/rest","reqQuery":"","time":"2020-11-05T17:30:17.282161468-03:00"}
298
[controller] {"PID":17365,"RequestID":"req-1faj24x7ujqu81qpblhx","level":"info","msg":"response","remoteAddr":"127.0.0.1:33790","reqBytes":0,"reqForwardedFor":"127.0.0.1","reqHost":"localhost:40157","reqMethod":"GET","reqPath":"discovery/v1/apis/arvados/v1/rest","reqQuery":"","respBody":"{\"errors\":[\"Get \\\"http://localhost:36571/discovery/v1/apis/arvados/v1/rest\\\": dial tcp [::1]:36571: connect: connection refused\"]}\n","respBytes":131,"respStatus":"Bad Gateway","respStatusCode":502,"time":"2020-11-05T17:30:17.282633738-03:00","timeToStatus":0.000448,"timeTotal":0.000470,"timeWriteBody":0.000022}
299
{"PID":16970,"command":"[bundle install --jobs 4 --path /root/.gem]","dir":"apps/workbench","level":"info","msg":"executing","time":"2020-11-05T17:30:17.722788425-03:00"}
300
[apps/workbench: bundle] Don't run Bundler as root. Bundler can ask for sudo if it is needed, and installing your bundle as root will break this application for all non-root users on this machine.
301
[services/api: passenger] [ N 2020-11-05 17:30:18.1575 17418/T1 age/Wat/WatchdogMain.cpp:1366 ]: Starting Passenger watchdog...
302
[services/api: passenger] [ W 2020-11-05 17:30:18.1602 17418/T1 age/Wat/WatchdogMain.cpp:1079 ]: WARNING: potential privilege escalation vulnerability detected. Phusion Passenger is running as root, and part(s) of the Passenger instance directory (/tmp/arvados-server-boot-420120283) can be changed by non-root user(s):
303
[services/api: passenger] 
304
[services/api: passenger]  - /tmp/arvados-server-boot-420120283 is not secure: it can be modified by user nobody
305
[services/api: passenger] 
306
[services/api: passenger] Please either fix up the permissions for the insecure paths, or use a different location for the instance dir that can only be modified by root.
307
[services/api: passenger] [ N 2020-11-05 17:30:18.1814 17421/T1 age/Cor/CoreMain.cpp:1339 ]: Starting Passenger core...
308
[services/api: passenger] [ N 2020-11-05 17:30:18.1816 17421/T1 age/Cor/CoreMain.cpp:256 ]: Passenger core running in multi-application mode.
309
[services/api: passenger] [ N 2020-11-05 17:30:18.1903 17421/T1 age/Cor/CoreMain.cpp:1014 ]: Passenger core online, PID 17421
310
[services/api: passenger] [ I 2020-11-05 17:30:18.1906 17418/T1 age/Wat/WatchdogMain.cpp:1412 ]: All Phusion Passenger agents started!
311
[services/api: passenger] =============== Phusion Passenger Standalone web server started ===============
312
[services/api: passenger] PID file: /tmp/arvados-server-boot-420120283/passenger.services_api.pid
313
[services/api: passenger] Log file: /dev/stderr
314
[services/api: passenger] Environment: test
315
[services/api: passenger] Accessible via: http://0.0.0.0:36571/
316
[services/api: passenger] 
317
[services/api: passenger] You can stop Phusion Passenger Standalone by pressing Ctrl-C.
318
[services/api: passenger] Problems? Check https://www.phusionpassenger.com/library/admin/standalone/troubleshooting/
319
[services/api: passenger] ===============================================================================
320
[apps/workbench: bundle] Using rake 13.0.1
321
[apps/workbench: bundle] Using RedCloth 4.3.2
322
[apps/workbench: bundle] Using concurrent-ruby 1.1.6
323
[apps/workbench: bundle] Using i18n 0.9.5
324
[apps/workbench: bundle] Using minitest 5.10.3
325
[apps/workbench: bundle] Using thread_safe 0.3.6
326
[apps/workbench: bundle] Using tzinfo 1.2.7
327
[apps/workbench: bundle] Using activesupport 5.2.4.3
328
[apps/workbench: bundle] Using builder 3.2.4
329
[apps/workbench: bundle] Using erubi 1.9.0
330
[apps/workbench: bundle] Using mini_portile2 2.4.0
331
[apps/workbench: bundle] Using nokogiri 1.10.10
332
[apps/workbench: bundle] Using rails-dom-testing 2.0.3
333
[apps/workbench: bundle] Using crass 1.0.6
334
[apps/workbench: bundle] Using loofah 2.6.0
335
[apps/workbench: bundle] Using rails-html-sanitizer 1.3.0
336
[apps/workbench: bundle] Using actionview 5.2.4.3
337
[apps/workbench: bundle] Using rack 2.2.3
338
[apps/workbench: bundle] Using rack-test 1.1.0
339
[apps/workbench: bundle] Using actionpack 5.2.4.3
340
[apps/workbench: bundle] Using nio4r 2.5.2
341
[apps/workbench: bundle] Using websocket-extensions 0.1.5
342
[apps/workbench: bundle] Using websocket-driver 0.7.3
343
[apps/workbench: bundle] Using actioncable 5.2.4.3
344
[apps/workbench: bundle] Using globalid 0.4.2
345
[apps/workbench: bundle] Using activejob 5.2.4.3
346
[apps/workbench: bundle] Using mini_mime 1.0.2
347
[apps/workbench: bundle] Using mail 2.7.1
348
[apps/workbench: bundle] Using actionmailer 5.2.4.3
349
[apps/workbench: bundle] Using activemodel 5.2.4.3
350
[apps/workbench: bundle] Using arel 9.0.0
351
[apps/workbench: bundle] Using activerecord 5.2.4.3
352
[apps/workbench: bundle] Using activerecord-nulldb-adapter 0.3.9 from https://github.com/arvados/nulldb (at /media/psf/arvados/apps/workbench/vendor/cache/nulldb-d8e0073b665a@d8e0073)
353
[apps/workbench: bundle] Using mimemagic 0.3.5
354
[apps/workbench: bundle] Using marcel 0.3.3
355
[apps/workbench: bundle] Using activestorage 5.2.4.3
356
[apps/workbench: bundle] Using public_suffix 4.0.5
357
[apps/workbench: bundle] Using addressable 2.7.0
358
[apps/workbench: bundle] Using andand 1.3.3
359
[apps/workbench: bundle] Using angularjs-rails 1.3.15
360
[apps/workbench: bundle] Using extlib 0.9.16
361
[apps/workbench: bundle] Using multi_json 1.15.0
362
[apps/workbench: bundle] Using autoparse 0.3.3
363
[apps/workbench: bundle] Using multipart-post 2.1.1
364
[apps/workbench: bundle] Using faraday 0.15.4
365
[apps/workbench: bundle] Using jwt 1.5.6
366
[apps/workbench: bundle] Using memoist 0.16.2
367
[apps/workbench: bundle] Using os 1.1.1
368
[apps/workbench: bundle] Using signet 0.11.0
369
[apps/workbench: bundle] Using googleauth 0.9.0
370
[apps/workbench: bundle] Using launchy 2.4.3
371
[apps/workbench: bundle] Using retriable 1.4.1
372
[apps/workbench: bundle] Using arvados-google-api-client 0.8.7.4
373
[apps/workbench: bundle] Using json 2.3.0
374
[apps/workbench: bundle] Using arvados 1.5.0.pre20200114202620 from https://github.com/arvados/arvados.git (at /media/psf/arvados/apps/workbench/vendor/cache/arvados-c210114aa8c7@c210114)
375
[apps/workbench: bundle] Using execjs 2.7.0
376
[apps/workbench: bundle] Using autoprefixer-rails 9.5.1.1
377
[apps/workbench: bundle] Using msgpack 1.3.3
378
[apps/workbench: bundle] Using bootsnap 1.4.7
379
[apps/workbench: bundle] Using ffi 1.10.0
380
[apps/workbench: bundle] Using sassc 2.0.1
381
[apps/workbench: bundle] Using bootstrap-sass 3.4.1
382
[apps/workbench: bundle] Using method_source 1.0.0
383
[apps/workbench: bundle] Using thor 1.0.1
384
[apps/workbench: bundle] Using railties 5.2.4.3
385
[apps/workbench: bundle] Using bootstrap-tab-history-rails 0.1.0
386
[apps/workbench: bundle] Using bootstrap-x-editable-rails 1.5.1.1
387
[apps/workbench: bundle] Using bundler 1.17.3
388
[apps/workbench: bundle] Using byebug 11.0.1
389
[apps/workbench: bundle] Using highline 2.0.2
390
[apps/workbench: bundle] Using net-ssh 5.2.0
391
[apps/workbench: bundle] Using net-scp 2.0.0
392
[apps/workbench: bundle] Using net-sftp 2.1.2
393
[apps/workbench: bundle] Using net-ssh-gateway 2.0.0
394
[apps/workbench: bundle] Using capistrano 2.15.9
395
[apps/workbench: bundle] Using mime-types-data 3.2019.0331
396
[apps/workbench: bundle] Using mime-types 3.2.2
397
[apps/workbench: bundle] Using xpath 2.1.0
398
[apps/workbench: bundle] Using capybara 2.5.0
399
[apps/workbench: bundle] Using childprocess 0.9.0
400
[apps/workbench: bundle] Using cliver 0.3.2
401
[apps/workbench: bundle] Using coffee-script-source 1.12.2
402
[apps/workbench: bundle] Using coffee-script 2.4.1
403
[apps/workbench: bundle] Using coffee-rails 4.2.2
404
[apps/workbench: bundle] Using commonjs 0.2.7
405
[apps/workbench: bundle] Using deep_merge 1.2.1
406
[apps/workbench: bundle] Using docile 1.3.1
407
[apps/workbench: bundle] Using flamegraph 0.9.5
408
[apps/workbench: bundle] Using headless 1.0.2
409
[apps/workbench: bundle] Using httpclient 2.8.3
410
[apps/workbench: bundle] Using jquery-rails 4.3.3
411
[apps/workbench: bundle] Using less 2.6.0
412
[apps/workbench: bundle] Using sprockets 3.7.2
413
[apps/workbench: bundle] Using less-rails 4.0.0
414
[apps/workbench: bundle] Using libv8 3.16.14.19 (x86_64-linux)
415
[apps/workbench: bundle] Using request_store 1.4.1
416
[apps/workbench: bundle] Using lograge 0.10.0
417
[apps/workbench: bundle] Using logstash-event 1.2.02
418
[apps/workbench: bundle] Using metaclass 0.0.4
419
[apps/workbench: bundle] Using mocha 1.8.0
420
[apps/workbench: bundle] Using morrisjs-rails 0.5.1.2
421
[apps/workbench: bundle] Using sprockets-rails 3.2.1
422
[apps/workbench: bundle] Using rails 5.2.4.3
423
[apps/workbench: bundle] Using npm-rails 0.2.1
424
[apps/workbench: bundle] Using oj 3.7.12
425
[apps/workbench: bundle] Using passenger 6.0.2
426
[apps/workbench: bundle] Using piwik_analytics 1.0.2
427
[apps/workbench: bundle] Using poltergeist 1.5.1
428
[apps/workbench: bundle] Using rack-mini-profiler 1.0.2
429
[apps/workbench: bundle] Using rails-controller-testing 1.0.4
430
[apps/workbench: bundle] Using rails-perftest 0.0.7
431
[apps/workbench: bundle] Using raphael-rails 2.1.2
432
[apps/workbench: bundle] Using rb-fsevent 0.10.3
433
[apps/workbench: bundle] Using rb-inotify 0.10.0
434
[apps/workbench: bundle] Using ref 2.0.0
435
[apps/workbench: bundle] Using responders 2.4.1
436
[apps/workbench: bundle] Using ruby-debug-passenger 0.2.0
437
[apps/workbench: bundle] Using ruby-prof 0.17.0
438
[apps/workbench: bundle] Using rubyzip 1.3.0
439
[apps/workbench: bundle] Using rvm-capistrano 1.5.6
440
[apps/workbench: bundle] Using safe_yaml 1.0.5
441
[apps/workbench: bundle] Using sass-listen 4.0.0
442
[apps/workbench: bundle] Using sass 3.7.4
443
[apps/workbench: bundle] Using tilt 2.0.9
444
[apps/workbench: bundle] Using sassc-rails 2.1.0
445
[apps/workbench: bundle] Using selenium-webdriver 3.141.0
446
[apps/workbench: bundle] Using simplecov-html 0.10.2
447
[apps/workbench: bundle] Using simplecov 0.16.1
448
[apps/workbench: bundle] Using simplecov-rcov 0.2.3
449
[apps/workbench: bundle] Using sshkey 2.0.0
450
[apps/workbench: bundle] Using themes_for_rails 0.5.1 from https://github.com/arvados/themes_for_rails (at /media/psf/arvados/apps/workbench/vendor/cache/themes_for_rails-ddf6e592b3b6@ddf6e59)
451
[apps/workbench: bundle] Using therubyracer 0.12.3
452
[apps/workbench: bundle] Using uglifier 2.7.2
453
[apps/workbench: bundle] Updating files in vendor/cache
454
[controller] {"PID":17365,"RequestID":"req-19pv4u3aca0ytpktqd2p","level":"info","msg":"request","remoteAddr":"127.0.0.1:33808","reqBytes":0,"reqForwardedFor":"127.0.0.1","reqHost":"localhost:40157","reqMethod":"GET","reqPath":"discovery/v1/apis/arvados/v1/rest","reqQuery":"","time":"2020-11-05T17:30:19.286270860-03:00"}
455
[services/api: passenger] [ N 2020-11-05 17:30:21.4001 17421/T8 age/Cor/SecurityUpdateChecker.h:519 ]: Security update check: no update found (next check in 24 hours)
456
[-l] 2020-11-05 17:30:22.053 -03 [17526] ERROR:  database "arvados_test" already exists
457
[-l] 2020-11-05 17:30:22.053 -03 [17526] STATEMENT:  CREATE DATABASE "arvados_test" ENCODING = 'utf8' TEMPLATE = "template0" LC_COLLATE = 'en_US.UTF-8'
458
[services/api: rake] Database 'arvados_test' already exists
459
[services/api: rake]    (0.2ms)  SET TIME ZONE 'UTC'
460
[services/api: rake]    (0.5ms)  CREATE DATABASE "arvados_test" ENCODING = 'utf8' TEMPLATE = "template0" LC_COLLATE = 'en_US.UTF-8'
461
[services/api: rake]    (0.1ms)  SET TIME ZONE 'UTC'
462
[services/api: rake]  set_config 
463
[services/api: rake] ------------
464
[services/api: rake]  
465
[services/api: rake] (1 row)
466
[services/api: rake] 
467
[services/api: passenger] App 17449 output:    (0.6ms)  SELECT clock_timestamp() AT TIME ZONE 'UTC'
468
[services/api: passenger] [ I 2020-11-05 17:30:23.3943 17421/Tf age/Cor/Spa/SmartSpawner.h:463 ]: Preloader for /media/psf/arvados/services/api started on PID 17449, listening on unix:/tmp/arvados-server-boot-420120283/passenger.Ltkue6W/apps.s/preloader.1h6yr0l
469
[services/api: passenger] App 17550 output:    (0.1ms)  SET TIME ZONE 'UTC'
470
[services/api: passenger] App 17550 output:   User Load (1.2ms)  SELECT  "users".* FROM "users" WHERE (redirect_to_user_uuid is null) AND "users"."uuid" = $1 LIMIT $2  [["uuid", "zzzzz-tpzed-000000000000000"], ["LIMIT", 1]]
471
[services/api: passenger] App 17550 output:   User Load (0.6ms)  SELECT  "users".* FROM "users" WHERE (redirect_to_user_uuid is null) AND "users"."uuid" = $1 ORDER BY "users"."id" ASC LIMIT $2  [["uuid", "zzzzz-tpzed-000000000000000"], ["LIMIT", 1]]
472
[services/api: passenger] App 17550 output:    (0.2ms)  BEGIN
473
[services/api: passenger] App 17550 output:    (1.2ms)  SELECT clock_timestamp() AT TIME ZONE 'UTC'
474
[services/api: passenger] App 17550 output:    (1.0ms)  SELECT COUNT(*) FROM "users" WHERE (redirect_to_user_uuid is null) AND "users"."uuid" = $1 AND (email = 'root') AND "users"."is_admin" = $2  [["uuid", "zzzzz-tpzed-000000000000000"], ["is_admin", true]]
475
[services/api: passenger] App 17550 output:    (0.8ms)  SELECT COUNT(*) FROM "users" WHERE (redirect_to_user_uuid is null) AND "users"."uuid" = $1 AND (uuid not like '%-000000000000000') AND "users"."is_admin" = $2  [["uuid", "zzzzz-tpzed-000000000000000"], ["is_admin", true]]
476
[services/api: passenger] App 17550 output:   User Create (1.3ms)  INSERT INTO "users" ("uuid", "owner_uuid", "created_at", "modified_by_user_uuid", "modified_at", "email", "first_name", "last_name", "is_admin", "updated_at", "is_active") VALUES ($1, $2, $3, $4, $5, $6, $7, $8, $9, $10, $11) RETURNING "id"  [["uuid", "zzzzz-tpzed-000000000000000"], ["owner_uuid", "zzzzz-tpzed-000000000000000"], ["created_at", "2020-11-05 20:30:23.615071"], ["modified_by_user_uuid", "zzzzz-tpzed-000000000000000"], ["modified_at", "2020-11-05 20:30:23.617030"], ["email", "root"], ["first_name", "root"], ["last_name", ""], ["is_admin", true], ["updated_at", "2020-11-05 20:30:23.617030"], ["is_active", true]]
477
[services/api: passenger] App 17550 output:    (1.2ms)  SELECT clock_timestamp() AT TIME ZONE 'UTC'
478
[services/api: passenger] App 17550 output:   Log Create (2.0ms)  INSERT INTO "logs" ("uuid", "owner_uuid", "modified_by_user_uuid", "object_uuid", "event_at", "event_type", "summary", "properties", "created_at", "updated_at", "modified_at", "object_owner_uuid") VALUES ($1, $2, $3, $4, $5, $6, $7, $8, $9, $10, $11, $12) RETURNING "id"  [["uuid", "zzzzz-57u5n-0ohp5n08lcq9jdt"], ["owner_uuid", "zzzzz-tpzed-000000000000000"], ["modified_by_user_uuid", "zzzzz-tpzed-000000000000000"], ["object_uuid", "zzzzz-tpzed-000000000000000"], ["event_at", "2020-11-05 20:30:23.615071"], ["event_type", "create"], ["summary", "create of zzzzz-tpzed-000000000000000"], ["properties", "{\"old_etag\":null,\"old_attributes\":null,\"new_etag\":\"ufk7qujnf8ljvvn0trto01r4\",\"new_attributes\":{\"id\":1,\"uuid\":\"zzzzz-tpzed-000000000000000\",\"owner_uuid\":\"zzzzz-tpzed-000000000000000\",\"created_at\":\"2020-11-05T20:30:23.615071546Z\",\"modified_by_client_uuid\":null,\"modified_by_user_uuid\":\"zzzzz-tpzed-000000000000000\",\"modified_at\":\"2020-11-05T20:30:23.617030000Z\",\"email\":\"root\",\"first_name\":\"root\",\"last_name\":\"\",\"identity_url\":null,\"is_admin\":true,\"prefs\":{},\"updated_at\":\"2020-11-05T20:30:23.617030000Z\",\"default_owner_uuid\":null,\"is_active\":true,\"username\":null,\"redirect_to_user_uuid\":null}}"], ["created_at", "2020-11-05 20:30:23.685897"], ["updated_at", "2020-11-05 20:30:23.686467"], ["modified_at", "2020-11-05 20:30:23.686467"], ["object_owner_uuid", "zzzzz-tpzed-000000000000000"]]
479
[services/api: passenger] App 17550 output:    (0.8ms)  NOTIFY logs, '1'
480
[services/api: passenger] App 17550 output:    (1.1ms)  LOCK TABLE materialized_permissions in SHARE MODE
481
[services/api: passenger] App 17550 output:   SQL (0.3ms)  SET LOCAL enable_mergejoin to false;
482
[services/api: passenger] App 17550 output:   update_permissions.select (14.2ms)  
483
[services/api: passenger] App 17550 output: create temporary table temp_perms_11405793009089601573 on commit drop
484
[services/api: passenger] App 17550 output: as select * from compute_permission_subgraph($1, $2, $3, $4)
485
[services/api: passenger] App 17550 output:   [[nil, "zzzzz-tpzed-000000000000000"], [nil, "zzzzz-tpzed-000000000000000"], [nil, 3], [nil, "zzzzz-tpzed-000000000000000"]]
486
[services/api: passenger] App 17550 output:   SQL (0.3ms)  SET LOCAL enable_mergejoin to true;
487
[services/api: passenger] App 17550 output:   update_permissions.delete (1.0ms)  
488
[services/api: passenger] App 17550 output: delete from materialized_permissions where
489
[services/api: passenger] App 17550 output:   target_uuid in (select target_uuid from temp_perms_11405793009089601573) and
490
[services/api: passenger] App 17550 output:   not exists (select 1 from temp_perms_11405793009089601573
491
[services/api: passenger] App 17550 output:               where target_uuid=materialized_permissions.target_uuid and
492
[services/api: passenger] App 17550 output:                     user_uuid=materialized_permissions.user_uuid and
493
[services/api: passenger] App 17550 output:                     val>0)
494
[services/api: passenger] App 17550 output: 
495
[services/api: passenger] App 17550 output:   update_permissions.insert (0.6ms)  
496
[services/api: passenger] App 17550 output: insert into materialized_permissions (user_uuid, target_uuid, perm_level, traverse_owned)
497
[services/api: passenger] App 17550 output:   select user_uuid, target_uuid, val as perm_level, traverse_owned from temp_perms_11405793009089601573 where val>0
498
[services/api: passenger] App 17550 output: on conflict (user_uuid, target_uuid) do update set perm_level=EXCLUDED.perm_level, traverse_owned=EXCLUDED.traverse_owned;
499
[services/api: passenger] App 17550 output: 
500
[services/api: passenger] App 17550 output:   check_permissions_against_full_refresh.permission_table (0.7ms)  
501
[services/api: passenger] App 17550 output: select user_uuid, target_uuid, perm_level, traverse_owned from materialized_permissions
502
[services/api: passenger] App 17550 output: order by user_uuid, target_uuid
503
[services/api: passenger] App 17550 output: 
504
[services/api: passenger] App 17550 output:   check_permissions_against_full_refresh.full_recompute (3.3ms)  
505
[services/api: passenger] App 17550 output:     select pq.origin_uuid as user_uuid, target_uuid, pq.val as perm_level, pq.traverse_owned from (
506
[services/api: passenger] App 17550 output:     
507
[services/api: passenger] App 17550 output: WITH RECURSIVE
508
[services/api: passenger] App 17550 output:         traverse_graph(origin_uuid, target_uuid, val, traverse_owned, starting_set) as (
509
[services/api: passenger] App 17550 output:             
510
[services/api: passenger] App 17550 output:         select uuid, uuid, 3, true, true from users
511
[services/api: passenger] App 17550 output: 
512
[services/api: passenger] App 17550 output:           union
513
[services/api: passenger] App 17550 output:             (select traverse_graph.origin_uuid,
514
[services/api: passenger] App 17550 output:                     edges.head_uuid,
515
[services/api: passenger] App 17550 output:                       least(edges.val,
516
[services/api: passenger] App 17550 output:                             traverse_graph.val),
517
[services/api: passenger] App 17550 output:                     should_traverse_owned(edges.head_uuid, edges.val),
518
[services/api: passenger] App 17550 output:                     false
519
[services/api: passenger] App 17550 output:              from permission_graph_edges as edges, traverse_graph
520
[services/api: passenger] App 17550 output:              where traverse_graph.target_uuid = edges.tail_uuid
521
[services/api: passenger] App 17550 output:              and (edges.tail_uuid like '_____-j7d0g-_______________' or
522
[services/api: passenger] App 17550 output:                   traverse_graph.starting_set)))
523
[services/api: passenger] App 17550 output:         select traverse_graph.origin_uuid, target_uuid, max(val) as val, bool_or(traverse_owned) as traverse_owned from traverse_graph
524
[services/api: passenger] App 17550 output:         group by (traverse_graph.origin_uuid, target_uuid)
525
[services/api: passenger] App 17550 output: ) as pq order by origin_uuid, target_uuid
526
[services/api: passenger] App 17550 output: 
527
[services/api: passenger] App 17550 output: AdminNotifier#new_user: processed outbound mail in 0.5ms
528
[services/api: passenger] App 17550 output:    (7.8ms)  COMMIT
529
[services/api: passenger] App 17550 output:    (3.0ms)  BEGIN
530
[services/api: passenger] App 17550 output:   ApiClient Load (0.8ms)  SELECT  "api_clients".* FROM "api_clients" WHERE "api_clients"."is_trusted" = $1 AND "api_clients"."url_prefix" = $2 AND "api_clients"."name" = $3 LIMIT $4  [["is_trusted", true], ["url_prefix", ""], ["name", "SystemRootToken"], ["LIMIT", 1]]
531
[services/api: passenger] App 17571 output: [req-cyktna5qodmmc7fstzlu] "Path not found."
532
[services/api: passenger] App 17571 output: [req-cyktna5qodmmc7fstzlu] Error 1604608223+249df345: 404
533
[services/api: passenger] App 17550 output:    (0.9ms)  SELECT clock_timestamp() AT TIME ZONE 'UTC'
534
[services/api: passenger] App 17571 output: {"method":"HEAD","path":"/","format":"html","controller":"StaticController","action":"home","status":404,"duration":19.41,"view":3.25,"request_id":"req-cyktna5qodmmc7fstzlu","client_ipaddr":"127.0.0.1","client_auth":null,"params":{},"@timestamp":"2020-11-05T20:30:23.809456340Z","@version":"1","message":"[404] HEAD / (StaticController#home)"}
535
[services/api: passenger] App 17550 output:   ApiClient Create (1.2ms)  INSERT INTO "api_clients" ("uuid", "owner_uuid", "modified_by_user_uuid", "modified_at", "name", "url_prefix", "created_at", "updated_at", "is_trusted") VALUES ($1, $2, $3, $4, $5, $6, $7, $8, $9) RETURNING "id"  [["uuid", "zzzzz-ozdt8-8ycdgf11jw76zou"], ["owner_uuid", "zzzzz-tpzed-000000000000000"], ["modified_by_user_uuid", "zzzzz-tpzed-000000000000000"], ["modified_at", "2020-11-05 20:30:23.804400"], ["name", "SystemRootToken"], ["url_prefix", ""], ["created_at", "2020-11-05 20:30:23.802991"], ["updated_at", "2020-11-05 20:30:23.804400"], ["is_trusted", true]]
536
[services/api: passenger] App 17550 output:    (0.5ms)  SELECT clock_timestamp() AT TIME ZONE 'UTC'
537
[services/api: passenger] App 17550 output:   Log Create (0.7ms)  INSERT INTO "logs" ("uuid", "owner_uuid", "modified_by_user_uuid", "object_uuid", "event_at", "event_type", "summary", "properties", "created_at", "updated_at", "modified_at", "object_owner_uuid") VALUES ($1, $2, $3, $4, $5, $6, $7, $8, $9, $10, $11, $12) RETURNING "id"  [["uuid", "zzzzz-57u5n-qr0dpntpjot5ei4"], ["owner_uuid", "zzzzz-tpzed-000000000000000"], ["modified_by_user_uuid", "zzzzz-tpzed-000000000000000"], ["object_uuid", "zzzzz-ozdt8-8ycdgf11jw76zou"], ["event_at", "2020-11-05 20:30:23.802991"], ["event_type", "create"], ["summary", "create of zzzzz-ozdt8-8ycdgf11jw76zou"], ["properties", "{\"old_etag\":null,\"old_attributes\":null,\"new_etag\":\"4gisp905j1jt0nd4c6gop6mfw\",\"new_attributes\":{\"id\":1,\"uuid\":\"zzzzz-ozdt8-8ycdgf11jw76zou\",\"owner_uuid\":\"zzzzz-tpzed-000000000000000\",\"modified_by_client_uuid\":null,\"modified_by_user_uuid\":\"zzzzz-tpzed-000000000000000\",\"modified_at\":\"2020-11-05T20:30:23.804400000Z\",\"name\":\"SystemRootToken\",\"url_prefix\":\"\",\"created_at\":\"2020-11-05T20:30:23.802991514Z\",\"updated_at\":\"2020-11-05T20:30:23.804400000Z\",\"is_trusted\":true}}"], ["created_at", "2020-11-05 20:30:23.814026"], ["updated_at", "2020-11-05 20:30:23.814466"], ["modified_at", "2020-11-05 20:30:23.814466"], ["object_owner_uuid", "zzzzz-tpzed-000000000000000"]]
538
[services/api: passenger] App 17550 output:    (0.3ms)  NOTIFY logs, '2'
539
[services/api: passenger] App 17550 output:    (1.9ms)  COMMIT
540
[-l] 2020-11-05 17:30:23.861 -03 [17542] ERROR:  duplicate key value violates unique constraint "index_users_on_uuid"
541
[-l] 2020-11-05 17:30:23.861 -03 [17542] DETAIL:  Key (uuid)=(zzzzz-tpzed-000000000000000) already exists.
542
[-l] 2020-11-05 17:30:23.861 -03 [17542] STATEMENT:  INSERT INTO "users" ("uuid", "owner_uuid", "created_at", "modified_by_user_uuid", "modified_at", "email", "first_name", "last_name", "is_admin", "updated_at", "is_active") VALUES ($1, $2, $3, $4, $5, $6, $7, $8, $9, $10, $11) RETURNING "id"
543
[services/api: rake] rake aborted!
544
[services/api: rake] ActiveRecord::RecordNotUnique: PG::UniqueViolation: ERROR:  duplicate key value violates unique constraint "index_users_on_uuid"
545
[services/api: rake] DETAIL:  Key (uuid)=(zzzzz-tpzed-000000000000000) already exists.
546
[services/api: rake] : INSERT INTO "users" ("uuid", "owner_uuid", "created_at", "modified_by_user_uuid", "modified_at", "email", "first_name", "last_name", "is_admin", "updated_at", "is_active") VALUES ($1, $2, $3, $4, $5, $6, $7, $8, $9, $10, $11) RETURNING "id"
547
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/connection_adapters/postgresql_adapter.rb:611:in `async_exec_params'
548
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/connection_adapters/postgresql_adapter.rb:611:in `block (2 levels) in exec_no_cache'
549
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activesupport-5.2.4.3/lib/active_support/dependencies/interlock.rb:48:in `block in permit_concurrent_loads'
550
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activesupport-5.2.4.3/lib/active_support/concurrency/share_lock.rb:187:in `yield_shares'
551
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activesupport-5.2.4.3/lib/active_support/dependencies/interlock.rb:47:in `permit_concurrent_loads'
552
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/connection_adapters/postgresql_adapter.rb:610:in `block in exec_no_cache'
553
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/connection_adapters/abstract_adapter.rb:581:in `block (2 levels) in log'
554
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/connection_adapters/abstract_adapter.rb:580:in `block in log'
555
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activesupport-5.2.4.3/lib/active_support/notifications/instrumenter.rb:23:in `instrument'
556
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/connection_adapters/abstract_adapter.rb:571:in `log'
557
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/connection_adapters/postgresql_adapter.rb:609:in `exec_no_cache'
558
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/connection_adapters/postgresql_adapter.rb:598:in `execute_and_clear'
559
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/connection_adapters/postgresql/database_statements.rb:81:in `exec_query'
560
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/connection_adapters/abstract/database_statements.rb:130:in `exec_insert'
561
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/connection_adapters/postgresql/database_statements.rb:115:in `exec_insert'
562
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/connection_adapters/abstract/database_statements.rb:162:in `insert'
563
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/connection_adapters/abstract/query_cache.rb:21:in `insert'
564
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/persistence.rb:187:in `_insert_record'
565
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/persistence.rb:734:in `_create_record'
566
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/counter_cache.rb:184:in `_create_record'
567
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/locking/optimistic.rb:70:in `_create_record'
568
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/attribute_methods/dirty.rb:140:in `_create_record'
569
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/callbacks.rb:346:in `block in _create_record'
570
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activesupport-5.2.4.3/lib/active_support/callbacks.rb:132:in `run_callbacks'
571
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activesupport-5.2.4.3/lib/active_support/callbacks.rb:816:in `_run_create_callbacks'
572
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/callbacks.rb:346:in `_create_record'
573
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/timestamp.rb:102:in `_create_record'
574
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/persistence.rb:705:in `create_or_update'
575
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/callbacks.rb:342:in `block in create_or_update'
576
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activesupport-5.2.4.3/lib/active_support/callbacks.rb:132:in `run_callbacks'
577
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activesupport-5.2.4.3/lib/active_support/callbacks.rb:816:in `_run_save_callbacks'
578
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/callbacks.rb:342:in `create_or_update'
579
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/persistence.rb:308:in `save!'
580
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/validations.rb:52:in `save!'
581
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/transactions.rb:315:in `block in save!'
582
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/transactions.rb:387:in `block in with_transaction_returning_status'
583
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/connection_adapters/abstract/database_statements.rb:267:in `block in transaction'
584
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/connection_adapters/abstract/transaction.rb:239:in `block in within_new_transaction'
585
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/connection_adapters/abstract/transaction.rb:236:in `within_new_transaction'
586
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/connection_adapters/abstract/database_statements.rb:267:in `transaction'
587
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/transactions.rb:212:in `transaction'
588
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/transactions.rb:385:in `with_transaction_returning_status'
589
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/transactions.rb:315:in `save!'
590
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/suppressor.rb:48:in `save!'
591
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/persistence.rb:53:in `create!'
592
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/relation.rb:99:in `block in create!'
593
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/relation.rb:281:in `scoping'
594
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/relation.rb:99:in `create!'
595
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/relation.rb:108:in `first_or_create!'
596
[services/api: rake] /media/psf/arvados/services/api/lib/current_api_client.rb:84:in `block in system_user'
597
[services/api: rake] /media/psf/arvados/services/api/lib/current_api_client.rb:287:in `check_cache'
598
[services/api: rake] /media/psf/arvados/services/api/lib/current_api_client.rb:77:in `system_user'
599
[services/api: rake] /media/psf/arvados/services/api/app/models/database_seeds.rb:11:in `block in install'
600
[services/api: rake] /media/psf/arvados/services/api/lib/update_permissions.rb:200:in `batch_update_permissions'
601
[services/api: rake] /media/psf/arvados/services/api/app/models/database_seeds.rb:10:in `install'
602
[services/api: rake] /media/psf/arvados/services/api/db/seeds.rb:9:in `<top (required)>'
603
[services/api: rake] /root/.gem/ruby/2.5.0/gems/bootsnap-1.4.7/lib/bootsnap/load_path_cache/core_ext/kernel_require.rb:55:in `load'
604
[services/api: rake] /root/.gem/ruby/2.5.0/gems/bootsnap-1.4.7/lib/bootsnap/load_path_cache/core_ext/kernel_require.rb:55:in `load'
605
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activesupport-5.2.4.3/lib/active_support/dependencies.rb:285:in `block in load'
606
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activesupport-5.2.4.3/lib/active_support/dependencies.rb:257:in `load_dependency'
607
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activesupport-5.2.4.3/lib/active_support/dependencies.rb:285:in `load'
608
[services/api: rake] /root/.gem/ruby/2.5.0/gems/railties-5.2.4.3/lib/rails/engine.rb:554:in `block in load_seed'
609
[services/api: rake] /root/.gem/ruby/2.5.0/gems/railties-5.2.4.3/lib/rails/engine.rb:672:in `with_inline_jobs'
610
[services/api: rake] /root/.gem/ruby/2.5.0/gems/railties-5.2.4.3/lib/rails/engine.rb:554:in `load_seed'
611
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/tasks/database_tasks.rb:281:in `load_seed'
612
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/railties/databases.rake:194:in `block (2 levels) in <top (required)>'
613
[services/api: rake] /root/.gem/ruby/2.5.0/gems/rake-13.0.1/exe/rake:27:in `<top (required)>'
614
[services/api: rake] /root/.gem/ruby/2.5.0/gems/bundler-1.17.3/lib/bundler/cli/exec.rb:74:in `load'
615
[services/api: rake] /root/.gem/ruby/2.5.0/gems/bundler-1.17.3/lib/bundler/cli/exec.rb:74:in `kernel_load'
616
[services/api: rake] /root/.gem/ruby/2.5.0/gems/bundler-1.17.3/lib/bundler/cli/exec.rb:28:in `run'
617
[services/api: rake] /root/.gem/ruby/2.5.0/gems/bundler-1.17.3/lib/bundler/cli.rb:463:in `exec'
618
[services/api: rake] /root/.gem/ruby/2.5.0/gems/bundler-1.17.3/lib/bundler/vendor/thor/lib/thor/command.rb:27:in `run'
619
[services/api: rake] /root/.gem/ruby/2.5.0/gems/bundler-1.17.3/lib/bundler/vendor/thor/lib/thor/invocation.rb:126:in `invoke_command'
620
[services/api: rake] /root/.gem/ruby/2.5.0/gems/bundler-1.17.3/lib/bundler/vendor/thor/lib/thor.rb:387:in `dispatch'
621
[services/api: rake] /root/.gem/ruby/2.5.0/gems/bundler-1.17.3/lib/bundler/cli.rb:27:in `dispatch'
622
[services/api: rake] /root/.gem/ruby/2.5.0/gems/bundler-1.17.3/lib/bundler/vendor/thor/lib/thor/base.rb:466:in `start'
623
[services/api: rake] /root/.gem/ruby/2.5.0/gems/bundler-1.17.3/lib/bundler/cli.rb:18:in `start'
624
[services/api: rake] /root/.gem/ruby/2.5.0/gems/bundler-1.17.3/exe/bundle:30:in `block in <top (required)>'
625
[services/api: rake] /root/.gem/ruby/2.5.0/gems/bundler-1.17.3/lib/bundler/friendly_errors.rb:124:in `with_friendly_errors'
626
[services/api: rake] /root/.gem/ruby/2.5.0/gems/bundler-1.17.3/exe/bundle:22:in `<top (required)>'
627
[services/api: rake] /root/.gem/ruby/2.5.0/bin/bundle:23:in `load'
628
[services/api: rake] /root/.gem/ruby/2.5.0/bin/bundle:23:in `<main>'
629
[services/api: rake] 
630
[services/api: rake] Caused by:
631
[services/api: rake] PG::UniqueViolation: ERROR:  duplicate key value violates unique constraint "index_users_on_uuid"
632
[services/api: rake] DETAIL:  Key (uuid)=(zzzzz-tpzed-000000000000000) already exists.
633
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/connection_adapters/postgresql_adapter.rb:611:in `async_exec_params'
634
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/connection_adapters/postgresql_adapter.rb:611:in `block (2 levels) in exec_no_cache'
635
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activesupport-5.2.4.3/lib/active_support/dependencies/interlock.rb:48:in `block in permit_concurrent_loads'
636
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activesupport-5.2.4.3/lib/active_support/concurrency/share_lock.rb:187:in `yield_shares'
637
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activesupport-5.2.4.3/lib/active_support/dependencies/interlock.rb:47:in `permit_concurrent_loads'
638
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/connection_adapters/postgresql_adapter.rb:610:in `block in exec_no_cache'
639
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/connection_adapters/abstract_adapter.rb:581:in `block (2 levels) in log'
640
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/connection_adapters/abstract_adapter.rb:580:in `block in log'
641
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activesupport-5.2.4.3/lib/active_support/notifications/instrumenter.rb:23:in `instrument'
642
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/connection_adapters/abstract_adapter.rb:571:in `log'
643
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/connection_adapters/postgresql_adapter.rb:609:in `exec_no_cache'
644
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/connection_adapters/postgresql_adapter.rb:598:in `execute_and_clear'
645
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/connection_adapters/postgresql/database_statements.rb:81:in `exec_query'
646
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/connection_adapters/abstract/database_statements.rb:130:in `exec_insert'
647
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/connection_adapters/postgresql/database_statements.rb:115:in `exec_insert'
648
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/connection_adapters/abstract/database_statements.rb:162:in `insert'
649
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/connection_adapters/abstract/query_cache.rb:21:in `insert'
650
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/persistence.rb:187:in `_insert_record'
651
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/persistence.rb:734:in `_create_record'
652
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/counter_cache.rb:184:in `_create_record'
653
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/locking/optimistic.rb:70:in `_create_record'
654
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/attribute_methods/dirty.rb:140:in `_create_record'
655
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/callbacks.rb:346:in `block in _create_record'
656
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activesupport-5.2.4.3/lib/active_support/callbacks.rb:132:in `run_callbacks'
657
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activesupport-5.2.4.3/lib/active_support/callbacks.rb:816:in `_run_create_callbacks'
658
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/callbacks.rb:346:in `_create_record'
659
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/timestamp.rb:102:in `_create_record'
660
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/persistence.rb:705:in `create_or_update'
661
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/callbacks.rb:342:in `block in create_or_update'
662
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activesupport-5.2.4.3/lib/active_support/callbacks.rb:132:in `run_callbacks'
663
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activesupport-5.2.4.3/lib/active_support/callbacks.rb:816:in `_run_save_callbacks'
664
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/callbacks.rb:342:in `create_or_update'
665
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/persistence.rb:308:in `save!'
666
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/validations.rb:52:in `save!'
667
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/transactions.rb:315:in `block in save!'
668
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/transactions.rb:387:in `block in with_transaction_returning_status'
669
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/connection_adapters/abstract/database_statements.rb:267:in `block in transaction'
670
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/connection_adapters/abstract/transaction.rb:239:in `block in within_new_transaction'
671
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/connection_adapters/abstract/transaction.rb:236:in `within_new_transaction'
672
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/connection_adapters/abstract/database_statements.rb:267:in `transaction'
673
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/transactions.rb:212:in `transaction'
674
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/transactions.rb:385:in `with_transaction_returning_status'
675
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/transactions.rb:315:in `save!'
676
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/suppressor.rb:48:in `save!'
677
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/persistence.rb:53:in `create!'
678
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/relation.rb:99:in `block in create!'
679
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/relation.rb:281:in `scoping'
680
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/relation.rb:99:in `create!'
681
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/relation.rb:108:in `first_or_create!'
682
[services/api: rake] /media/psf/arvados/services/api/lib/current_api_client.rb:84:in `block in system_user'
683
[services/api: rake] /media/psf/arvados/services/api/lib/current_api_client.rb:287:in `check_cache'
684
[services/api: rake] /media/psf/arvados/services/api/lib/current_api_client.rb:77:in `system_user'
685
[services/api: rake] /media/psf/arvados/services/api/app/models/database_seeds.rb:11:in `block in install'
686
[services/api: rake] /media/psf/arvados/services/api/lib/update_permissions.rb:200:in `batch_update_permissions'
687
[services/api: rake] /media/psf/arvados/services/api/app/models/database_seeds.rb:10:in `install'
688
[services/api: rake] /media/psf/arvados/services/api/db/seeds.rb:9:in `<top (required)>'
689
[services/api: rake] /root/.gem/ruby/2.5.0/gems/bootsnap-1.4.7/lib/bootsnap/load_path_cache/core_ext/kernel_require.rb:55:in `load'
690
[services/api: rake] /root/.gem/ruby/2.5.0/gems/bootsnap-1.4.7/lib/bootsnap/load_path_cache/core_ext/kernel_require.rb:55:in `load'
691
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activesupport-5.2.4.3/lib/active_support/dependencies.rb:285:in `block in load'
692
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activesupport-5.2.4.3/lib/active_support/dependencies.rb:257:in `load_dependency'
693
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activesupport-5.2.4.3/lib/active_support/dependencies.rb:285:in `load'
694
[services/api: rake] /root/.gem/ruby/2.5.0/gems/railties-5.2.4.3/lib/rails/engine.rb:554:in `block in load_seed'
695
[services/api: rake] /root/.gem/ruby/2.5.0/gems/railties-5.2.4.3/lib/rails/engine.rb:672:in `with_inline_jobs'
696
[services/api: rake] /root/.gem/ruby/2.5.0/gems/railties-5.2.4.3/lib/rails/engine.rb:554:in `load_seed'
697
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/tasks/database_tasks.rb:281:in `load_seed'
698
[services/api: rake] /root/.gem/ruby/2.5.0/gems/activerecord-5.2.4.3/lib/active_record/railties/databases.rake:194:in `block (2 levels) in <top (required)>'
699
[services/api: rake] /root/.gem/ruby/2.5.0/gems/rake-13.0.1/exe/rake:27:in `<top (required)>'
700
[services/api: rake] /root/.gem/ruby/2.5.0/gems/bundler-1.17.3/lib/bundler/cli/exec.rb:74:in `load'
701
[services/api: rake] /root/.gem/ruby/2.5.0/gems/bundler-1.17.3/lib/bundler/cli/exec.rb:74:in `kernel_load'
702
[services/api: rake] /root/.gem/ruby/2.5.0/gems/bundler-1.17.3/lib/bundler/cli/exec.rb:28:in `run'
703
[services/api: rake] /root/.gem/ruby/2.5.0/gems/bundler-1.17.3/lib/bundler/cli.rb:463:in `exec'
704
[services/api: rake] /root/.gem/ruby/2.5.0/gems/bundler-1.17.3/lib/bundler/vendor/thor/lib/thor/command.rb:27:in `run'
705
[services/api: rake] /root/.gem/ruby/2.5.0/gems/bundler-1.17.3/lib/bundler/vendor/thor/lib/thor/invocation.rb:126:in `invoke_command'
706
[services/api: rake] /root/.gem/ruby/2.5.0/gems/bundler-1.17.3/lib/bundler/vendor/thor/lib/thor.rb:387:in `dispatch'
707
[services/api: rake] /root/.gem/ruby/2.5.0/gems/bundler-1.17.3/lib/bundler/cli.rb:27:in `dispatch'
708
[services/api: rake] /root/.gem/ruby/2.5.0/gems/bundler-1.17.3/lib/bundler/vendor/thor/lib/thor/base.rb:466:in `start'
709
[services/api: rake] /root/.gem/ruby/2.5.0/gems/bundler-1.17.3/lib/bundler/cli.rb:18:in `start'
710
[services/api: rake] /root/.gem/ruby/2.5.0/gems/bundler-1.17.3/exe/bundle:30:in `block in <top (required)>'
711
[services/api: rake] /root/.gem/ruby/2.5.0/gems/bundler-1.17.3/lib/bundler/friendly_errors.rb:124:in `with_friendly_errors'
712
[services/api: rake] /root/.gem/ruby/2.5.0/gems/bundler-1.17.3/exe/bundle:22:in `<top (required)>'
713
[services/api: rake] /root/.gem/ruby/2.5.0/bin/bundle:23:in `load'
714
[services/api: rake] /root/.gem/ruby/2.5.0/bin/bundle:23:in `<main>'
715
[services/api: rake] Tasks: TOP => db:setup => db:seed
716
[services/api: rake] (See full trace by running task with --trace)
717
[services/api: rake]    (0.1ms)  SET TIME ZONE 'UTC'
718
[services/api: rake]   ActiveRecord::InternalMetadata Load (0.5ms)  SELECT  "ar_internal_metadata".* FROM "ar_internal_metadata" WHERE "ar_internal_metadata"."key" = $1 LIMIT $2  [["key", "environment"], ["LIMIT", 1]]
719
[services/api: rake]    (0.3ms)  BEGIN
720
[services/api: rake]   ActiveRecord::InternalMetadata Create (1.2ms)  INSERT INTO "ar_internal_metadata" ("key", "value", "created_at", "updated_at") VALUES ($1, $2, $3, $4) RETURNING "key"  [["key", "environment"], ["value", "test"], ["created_at", "2020-11-05 20:30:22.840728"], ["updated_at", "2020-11-05 20:30:22.840728"]]
721
[services/api: rake]    (2.0ms)  COMMIT
722
[services/api: rake]    (0.6ms)  SET TIME ZONE 'UTC'
723
[services/api: rake]    (0.8ms)  SELECT "schema_migrations"."version" FROM "schema_migrations" ORDER BY "schema_migrations"."version" ASC
724
[services/api: rake]    (0.5ms)  SELECT clock_timestamp() AT TIME ZONE 'UTC'
725
[services/api: rake]   User Load (1.0ms)  SELECT  "users".* FROM "users" WHERE (redirect_to_user_uuid is null) AND "users"."uuid" = $1 ORDER BY "users"."id" ASC LIMIT $2  [["uuid", "zzzzz-tpzed-000000000000000"], ["LIMIT", 1]]
726
[services/api: rake]    (0.2ms)  BEGIN
727
[services/api: rake]    (0.6ms)  SELECT clock_timestamp() AT TIME ZONE 'UTC'
728
[services/api: rake]    (0.7ms)  SELECT COUNT(*) FROM "users" WHERE (redirect_to_user_uuid is null) AND "users"."uuid" = $1 AND (email = 'root') AND "users"."is_admin" = $2  [["uuid", "zzzzz-tpzed-000000000000000"], ["is_admin", true]]
729
[services/api: rake]    (0.7ms)  SELECT COUNT(*) FROM "users" WHERE (redirect_to_user_uuid is null) AND "users"."uuid" = $1 AND (uuid not like '%-000000000000000') AND "users"."is_admin" = $2  [["uuid", "zzzzz-tpzed-000000000000000"], ["is_admin", true]]
730
[services/api: rake]   User Create (1.2ms)  INSERT INTO "users" ("uuid", "owner_uuid", "created_at", "modified_by_user_uuid", "modified_at", "email", "first_name", "last_name", "is_admin", "updated_at", "is_active") VALUES ($1, $2, $3, $4, $5, $6, $7, $8, $9, $10, $11) RETURNING "id"  [["uuid", "zzzzz-tpzed-000000000000000"], ["owner_uuid", "zzzzz-tpzed-000000000000000"], ["created_at", "2020-11-05 20:30:23.854378"], ["modified_by_user_uuid", "zzzzz-tpzed-000000000000000"], ["modified_at", "2020-11-05 20:30:23.854928"], ["email", "root"], ["first_name", "root"], ["last_name", ""], ["is_admin", true], ["updated_at", "2020-11-05 20:30:23.854928"], ["is_active", true]]
731
[services/api: rake]    (0.2ms)  ROLLBACK
732
[services/api: rake]    (0.2ms)  BEGIN
733
[services/api: rake]    (0.3ms)  LOCK TABLE materialized_permissions
734
[services/api: rake]    (0.5ms)  DELETE FROM materialized_permissions
735
[services/api: rake]   refresh_permission_view.do (2.9ms)  
736
[services/api: rake] INSERT INTO materialized_permissions
737
[services/api: rake]     
738
[services/api: rake] WITH RECURSIVE
739
[services/api: rake]         traverse_graph(origin_uuid, target_uuid, val, traverse_owned, starting_set) as (
740
[services/api: rake]             
741
[services/api: rake]         select uuid, uuid, 3, true, true from users
742
[services/api: rake] 
743
[services/api: rake]           union
744
[services/api: rake]             (select traverse_graph.origin_uuid,
745
[services/api: rake]                     edges.head_uuid,
746
[services/api: rake]                       least(edges.val,
747
[services/api: rake]                             traverse_graph.val),
748
[services/api: rake]                     should_traverse_owned(edges.head_uuid, edges.val),
749
[services/api: rake]                     false
750
[services/api: rake]              from permission_graph_edges as edges, traverse_graph
751
[services/api: rake]              where traverse_graph.target_uuid = edges.tail_uuid
752
[services/api: rake]              and (edges.tail_uuid like '_____-j7d0g-_______________' or
753
[services/api: rake]                   traverse_graph.starting_set)))
754
[services/api: rake]         select traverse_graph.origin_uuid, target_uuid, max(val) as val, bool_or(traverse_owned) as traverse_owned from traverse_graph
755
[services/api: rake]         group by (traverse_graph.origin_uuid, target_uuid)
756
[services/api: rake] 
757
[services/api: rake] 
758
[services/api: rake]    (1.1ms)  COMMIT
759
{"PID":16970,"error":"[bundle exec rake db:setup]: error: exit status 1","level":"error","msg":"task failed","task":"seedDatabase","time":"2020-11-05T17:30:23.899735573-03:00"}
760
{"PID":16970,"level":"error","msg":"boot failed","time":"2020-11-05T17:30:23.899858023-03:00"}
761
{"PID":16970,"level":"info","msg":"task was never ready","task":"installPassenger:apps/workbench","time":"2020-11-05T17:30:23.899974718-03:00"}
762
{"PID":16970,"level":"info","msg":"task was never ready","task":"installPassenger:apps/workbench","time":"2020-11-05T17:30:23.899877148-03:00"}
763
[-l] 2020-11-05 17:30:23.900 -03 [17350] LOG:  received smart shutdown request
764
[-l] 2020-11-05 17:30:23.901 -03 [17378] LOG:  could not receive data from client: Connection reset by peer
765
[-l] 2020-11-05 17:30:23.906 -03 [17380] LOG:  could not receive data from client: Connection reset by peer
766
[-l] 2020-11-05 17:30:23.908 -03 [17379] LOG:  could not receive data from client: Connection reset by peer
767
[-l] 2020-11-05 17:30:23.913 -03 [17350] LOG:  background worker "logical replication launcher" (PID 17362) exited with exit code 1
768
[services/api: passenger] Stopping web server...nginx: [alert] could not open error log file: open() "/tmp/arvados-server-boot-420120283/passenger-standalone.10ef56t/logs/error.log" failed (2: No such file or directory)
769
[services/api: passenger] 2020/11/05 17:30:23 [emerg] 17591#0: open() "/tmp/arvados-server-boot-420120283/passenger-standalone.10ef56t/nginx.conf" failed (2: No such file or directory)
770
[services/api: passenger] PhusionPassenger::DaemonController::StopError: Daemon 'Nginx' failed to start.
771
[services/api: passenger]   /root/.gem/ruby/2.5.0/gems/passenger-6.0.2/src/ruby_supportlib/phusion_passenger/vendor/daemon_controller.rb:448:in `rescue in kill_daemon'
772
[services/api: passenger]   /root/.gem/ruby/2.5.0/gems/passenger-6.0.2/src/ruby_supportlib/phusion_passenger/vendor/daemon_controller.rb:445:in `kill_daemon'
773
[services/api: passenger]   /root/.gem/ruby/2.5.0/gems/passenger-6.0.2/src/ruby_supportlib/phusion_passenger/vendor/daemon_controller.rb:304:in `block (2 levels) in stop'
774
[services/api: passenger]   /var/lib/arvados/lib/ruby/2.5.0/timeout.rb:93:in `block in timeout'
775
[services/api: passenger]   /var/lib/arvados/lib/ruby/2.5.0/timeout.rb:103:in `timeout'
776
[services/api: passenger]   /root/.gem/ruby/2.5.0/gems/passenger-6.0.2/src/ruby_supportlib/phusion_passenger/vendor/daemon_controller.rb:303:in `block in stop'
777
[services/api: passenger]   /root/.gem/ruby/2.5.0/gems/passenger-6.0.2/src/ruby_supportlib/phusion_passenger/vendor/daemon_controller/lock_file.rb:68:in `block in exclusive_lock'
778
[services/api: passenger]   /root/.gem/ruby/2.5.0/gems/passenger-6.0.2/src/ruby_supportlib/phusion_passenger/vendor/daemon_controller/lock_file.rb:63:in `open'
779
[services/api: passenger]   /root/.gem/ruby/2.5.0/gems/passenger-6.0.2/src/ruby_supportlib/phusion_passenger/vendor/daemon_controller/lock_file.rb:63:in `exclusive_lock'
780
[services/api: passenger]   /root/.gem/ruby/2.5.0/gems/passenger-6.0.2/src/ruby_supportlib/phusion_passenger/vendor/daemon_controller.rb:301:in `stop'
781
[services/api: passenger]   /root/.gem/ruby/2.5.0/gems/passenger-6.0.2/src/ruby_supportlib/phusion_passenger/standalone/start_command.rb:531:in `block in trapsafe_shutdown_and_cleanup'
782
[services/api: passenger]   /root/.gem/ruby/2.5.0/gems/passenger-6.0.2/src/ruby_supportlib/phusion_passenger/standalone/start_command.rb:528:in `synchronize'
783
[services/api: passenger]   /root/.gem/ruby/2.5.0/gems/passenger-6.0.2/src/ruby_supportlib/phusion_passenger/standalone/start_command.rb:528:in `trapsafe_shutdown_and_cleanup'
784
[services/api: passenger]   /root/.gem/ruby/2.5.0/gems/passenger-6.0.2/src/ruby_supportlib/phusion_passenger/standalone/start_command.rb:76:in `rescue in run'
785
[services/api: passenger]   /root/.gem/ruby/2.5.0/gems/passenger-6.0.2/src/ruby_supportlib/phusion_passenger/standalone/start_command.rb:65:in `run'
786
[services/api: passenger]   /root/.gem/ruby/2.5.0/gems/passenger-6.0.2/src/ruby_supportlib/phusion_passenger/standalone/main.rb:51:in `run!'
787
[services/api: passenger]   /root/.gem/ruby/2.5.0/gems/passenger-6.0.2/bin/passenger:45:in `<top (required)>'
788
[services/api: passenger]   /root/.gem/ruby/2.5.0/bin/passenger:23:in `load'
789
[services/api: passenger]   /root/.gem/ruby/2.5.0/bin/passenger:23:in `<top (required)>'
790
[services/api: passenger] bundler: failed to load command: passenger (/root/.gem/ruby/2.5.0/bin/passenger)
791
{"PID":16970,"error":"context canceled","level":"warning","msg":"supervisor shut down","time":"2020-11-05T17:30:23.985653964-03:00"}
792
{"error":"context canceled","level":"info","msg":"exiting","time":"2020-11-05T17:30:23.985850750-03:00"}
    (1-1/1)