(venv)radhika@shell.9tee4:~/cwl/common-workflow-language$ cat arv-run.sh 
#!/bin/sh
exec arvados-cwl-runner --compute-checksum --api containers "$@"

(venv)radhika@shell.9tee4:~/cwl/common-workflow-language$ ./run_test.sh RUNNER=./arv-run.sh
--- Running conformance test v1.0 on /home/radhika/cwl/common-workflow-language/arv-run.sh ---
/home/radhika/venv/bin/arvados-cwl-runner 1.0.20160728182727, arvados-python-client 0.1.20160721023501, cwltool 1.0.20160726135535
Test [6/73] Workflow or tool uses unsupported feature:
Generate files not supported
Test [10/73] Workflow or tool uses unsupported feature:
Stderr redirection currently not suppported
Test [11/73] Workflow or tool uses unsupported feature:
Stderr redirection currently not suppported
Test [12/73] Workflow or tool uses unsupported feature:
Stderr redirection currently not suppported
Test [13/73] Workflow or tool uses unsupported feature:
Stdin redirection currently not suppported
Test [18/73] Workflow or tool uses unsupported feature:
Stdin redirection currently not suppported
Test [21/73] 2016-08-03 14:30:39 arvados.cwl-runner[8889] ERROR: While getting final output object: No JSON object could be decoded
2016-08-03 14:30:39 arvados.cwl-runner[8889] WARNING: Overall process status is UnsupportedRequirement
Workflow or tool uses unsupported feature:
Check log for details.
Test [35/73] 2016-08-03 14:54:15 arvados.cwl-runner[11710] ERROR: While getting final output object: No JSON object could be decoded
2016-08-03 14:54:15 arvados.cwl-runner[11710] WARNING: Overall process status is UnsupportedRequirement
Workflow or tool uses unsupported feature:
Check log for details.
Test [36/73] Test failed: /home/radhika/cwl/common-workflow-language/arv-run.sh --outdir=/tmp/tmpc3berE --quiet v1.0/env-wf1.cwl v1.0/env-job.json
Test requirement priority
expected output object {
    "out": {
        "checksum": "sha1$b3ec4ed1749c207e52b3a6d08c59f31d83bff519",
        "class": "File",
        "location": "out",
        "size": 15
    }
}
 got {
    "out": {
        "basename": "out",
        "class": "File",
        "location": "keep:e44c7b6c572a790cda32c3b8ff288222+47/out",
        "size": 15
    }
}
Compare failure expected {
    "checksum": "sha1$b3ec4ed1749c207e52b3a6d08c59f31d83bff519",
    "class": "File",
    "size": 15
}
got {
    "class": "File",
    "size": 15
}
Test [37/73] Test failed: /home/radhika/cwl/common-workflow-language/arv-run.sh --outdir=/tmp/tmp7Rbd_j --quiet v1.0/env-wf2.cwl v1.0/env-job.json
Test requirements override hints
expected output object {
    "out": {
        "checksum": "sha1$cdc1e84968261d6a7575b5305945471f8be199b6",
        "class": "File",
        "location": "out",
        "size": 9
    }
}
 got {
    "out": {
        "basename": "out",
        "class": "File",
        "location": "keep:6b537bf2bb97bd4f5b14686b2f5457cd+45/out",
        "size": 9
    }
}
Compare failure expected {
    "checksum": "sha1$cdc1e84968261d6a7575b5305945471f8be199b6",
    "class": "File",
    "size": 9
}
got {
    "class": "File",
    "size": 9
}
Test [38/73] 2016-08-03 14:59:04 arvados.cwl-runner[12192] ERROR: While getting final output object: No JSON object could be decoded
2016-08-03 14:59:04 arvados.cwl-runner[12192] WARNING: Overall process status is UnsupportedRequirement
Workflow or tool uses unsupported feature:
Check log for details.
Test [39/73] Test failed: /home/radhika/cwl/common-workflow-language/arv-run.sh --outdir=/tmp/tmpzrhPwi --quiet v1.0/revsort.cwl v1.0/revsort-job.json
Test sample workflows from the specification
expected output object {
    "output": {
        "checksum": "sha1$b9214658cc453331b62c2282b772a5c063dbd284",
        "class": "File",
        "location": "output.txt",
        "size": 1111
    }
}
 got {
    "output": {
        "basename": "output.txt",
        "class": "File",
        "location": "keep:ed7aa65105811db1a01b2c5b3c001de9+58/output.txt",
        "size": 1111
    }
}
Compare failure expected {
    "checksum": "sha1$b9214658cc453331b62c2282b772a5c063dbd284",
    "class": "File",
    "size": 1111
}
got {
    "class": "File",
    "size": 1111
}
Test [40/73]


Test [41/73] 2016-08-03 15:03:38 arvados.cwl-runner[12891] ERROR: While getting final output object: No JSON object could be decoded
2016-08-03 15:03:38 arvados.cwl-runner[12891] WARNING: Overall process status is UnsupportedRequirement
Workflow or tool uses unsupported feature:
Check log for details.
Test [42/73] Workflow or tool uses unsupported feature:
Generate files not supported
Test [45/73] Test failed: /home/radhika/cwl/common-workflow-language/arv-run.sh --outdir=/tmp/tmptdNybC --quiet v1.0/schemadef-wf.cwl v1.0/schemadef-job.json
Test SchemaDefRequirement definition used in workflow parameter

expected output object {
    "output": {
        "checksum": "sha1$f12e6cfe70f3253f70b0dbde17c692e7fb0f1e5e",
        "class": "File",
        "location": "output.txt",
        "size": 12
    }
}
 got {
    "output": {
        "basename": "output.txt",
        "class": "File",
        "location": "keep:0615107d3b762bf17891133ceac58423+54/output.txt",
        "size": 12
    }
}
Compare failure expected {
    "checksum": "sha1$f12e6cfe70f3253f70b0dbde17c692e7fb0f1e5e",
    "class": "File",
    "size": 12
}
got {
    "class": "File",
    "size": 12
}
Test [46/73]

Test [50/73]

Test [53/73] 2016-08-03 15:19:07 arvados.cwl-runner[23331] ERROR: While getting final output object: No JSON object could be decoded                                                                                                                                                                                                                                                         2016-08-03 15:19:07 arvados.cwl-runner[23331] WARNING: Overall process status is UnsupportedRequirement
Workflow or tool uses unsupported feature:
Check log for details.
Test [64/73] Test failed: /home/radhika/cwl/common-workflow-language/arv-run.sh --outdir=/tmp/tmp9HP57r --quiet 'v1.0/conflict-wf.cwl#collision' v1.0/conflict-job.json
Test workflow two input files with same name.
expected output object {
    "fileout": {
        "checksum": "sha1$a2d8d6e7b28295dc9977dc3bdb652ddd480995f0",
        "class": "File",
        "location": "out.txt",
        "size": 25
    }
}
 got {
    "fileout": {
        "basename": "out.txt",
        "class": "File",
        "location": "keep:0e8e4042f19c03f0da52b90c2466e56c+51/out.txt",
        "size": 25
    }
}
Compare failure expected {
    "checksum": "sha1$a2d8d6e7b28295dc9977dc3bdb652ddd480995f0",
    "class": "File",
    "size": 25
}
got {
    "class": "File",
    "size": 25
}
Test [69/73] Workflow or tool uses unsupported feature:
Generate files not supported
Test [70/73] Workflow or tool uses unsupported feature:
Generate files not supported
Test [72/73] Workflow or tool uses unsupported feature:
Generate files not supported
Test [73/73] 5 failures, 15 unsupported features

1 tool tests failed