Arvados: Issues
https://dev.arvados.org/
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2022-01-24T16:49:33Z
Arvados
Redmine
Arvados - Feature #18668 (In Progress): [deduplication report] add project support
https://dev.arvados.org/issues/18668
2022-01-24T16:49:33Z
Ward Vandewege
ward@curii.com
<ul>
<li>Add support for project uuids</li>
<li>Add tests</li>
<li>Add documentation</li>
</ul>
Arvados - Task #18616 (New): Review
https://dev.arvados.org/issues/18616
2022-01-06T16:06:36Z
Peter Amstutz
peter.amstutz@curii.com
Arvados - Task #18609 (New): Review
https://dev.arvados.org/issues/18609
2022-01-06T15:56:12Z
Lucas Di Pentima
lucas.dipentima@curii.com
Arvados - Bug #18278 (New): [k8s] start using an ingress
https://dev.arvados.org/issues/18278
2021-10-19T19:52:53Z
Ward Vandewege
ward@curii.com
<p>As reported in <a class="external" href="https://forum.arvados.org/t/deploy-arvados-on-gke">https://forum.arvados.org/t/deploy-arvados-on-gke</a>, the GKE k8s setup needs some work.</p>
Arvados - Task #18235 (New): Review
https://dev.arvados.org/issues/18235
2021-09-29T15:33:42Z
Peter Amstutz
peter.amstutz@curii.com
Arvados - Task #18234 (New): Review
https://dev.arvados.org/issues/18234
2021-09-29T15:33:32Z
Peter Amstutz
peter.amstutz@curii.com
Arvados - Task #17991 (In Progress): Review #17990 arvados-formula:commit:1ad296f, branch 17990-a...
https://dev.arvados.org/issues/17991
2021-08-09T12:14:38Z
Javier BĂ©rtoli
jbertoli@curii.com
Arvados - Task #17660 (In Progress): Review 17209-http-forward
https://dev.arvados.org/issues/17660
2021-05-11T19:10:31Z
Tom Clegg
tom@curii.com
Arvados - Task #17502 (In Progress): need help finding docker contain to run correct java version...
https://dev.arvados.org/issues/17502
2021-03-26T18:28:38Z
Sarah Zaranek
swz@curii.com
<p>Hi all -</p>
<p>So this is a silly request but for some reason I can't wrap my brain around it. I need a starting docker container that I can pull and build upon to run <a class="external" href="https://github.com/PharmGKB/PharmCAT">https://github.com/PharmGKB/PharmCAT</a>.</p>
<p>When I tried with the version of the openjdk container images (openjdk:17-slim) I had it didn't work and gave me this error --<br />3-09T20:14:37.816839222Z Exception in thread "main" <br />2021-03-09T20:14:37.817339827Z java.lang.UnsupportedClassVersionError: org/pharmgkb/pharmcat/PharmCAT : Unsupported major.minor version 52.0</p>
<p><a class="external" href="https://workbench.su92l.arvadosapi.com/container_requests/su92l-xvhdp-upc4gy3hlmml8o6">https://workbench.su92l.arvadosapi.com/container_requests/su92l-xvhdp-upc4gy3hlmml8o6</a></p>
<p>Could someone help me find the right openjdk image or another equivalent jdk image?</p>
<p>Thank you!</p>
Arvados - Feature #17313 (New): [Documentation] improve federation documentation
https://dev.arvados.org/issues/17313
2021-02-02T14:45:51Z
Ward Vandewege
ward@curii.com
<p>The Architecture page at <a class="external" href="https://doc.arvados.org/v2.1/architecture/federation.html">https://doc.arvados.org/v2.1/architecture/federation.html</a> and the admin section at <a class="external" href="https://doc.arvados.org/v2.1/admin/federation.html">https://doc.arvados.org/v2.1/admin/federation.html</a> have considerable overlap, but neither clearly lays out the types of federation and what some example use cases are.</p>
<p>We should upgrade the Architecture page to an entire Federation section, with these pages:</p>
<ul>
<li>Overview</li>
<li>Peer federation</li>
<li>Login federation</li>
<li>public-data access federation (need a new term for this type!)</li>
<li>Federation mechanics (move the "federation and signatures" section from <a class="external" href="https://doc.arvados.org/v2.1/architecture/manifest-format.html#federationsignatures">https://doc.arvados.org/v2.1/architecture/manifest-format.html#federationsignatures</a> here; also this is where some of the text from <a class="external" href="https://doc.arvados.org/v2.1/architecture/federation.html">https://doc.arvados.org/v2.1/architecture/federation.html</a> will go)</li>
</ul>
<p>For each federation type the page needs to clarify:</p>
<ul>
<li>when this type of federation is appropriate</li>
<li>how to configure the clusters involved</li>
<li>what the functional impact is (e.g. multisite search works in this particular way, login works like this, what happens when a user on cluster a requests a uuid that lives on another cluster, what happens when a workflow does that, etc)</li>
<li>security considerations</li>
</ul>
<p>Needless to say, it's fine to say "not yet implemented" for stuff that does not work.</p>
Arvados - Task #17283 (New): Review
https://dev.arvados.org/issues/17283
2021-01-20T16:58:06Z
Peter Amstutz
peter.amstutz@curii.com
Arvados - Task #17277 (New): Make sure machine is configured to respond for that virtual host
https://dev.arvados.org/issues/17277
2021-01-20T16:47:16Z
Peter Amstutz
peter.amstutz@curii.com
Arvados - Bug #16832 (New): replace linkchecker in our build environment
https://dev.arvados.org/issues/16832
2020-09-10T19:34:47Z
Ward Vandewege
ward@curii.com
<p>It's Python 2 only, and appears unmaintained upstream.</p>
<p>When done, make sure to update </p>
<pre><code>lib/install/deps.go</code></pre>
<p>so that </p>
<pre><code>arvados-server install -type test</code></pre>
<p>keeps doing the right thing.</p>
Arvados - Feature #16389 (In Progress): [k8s] add support for Amazon EKS
https://dev.arvados.org/issues/16389
2020-04-30T16:10:24Z
Ward Vandewege
ward@curii.com
<p>Look at <a class="external" href="https://gitlab.com/iidsgt/arv-helm">https://gitlab.com/iidsgt/arv-helm</a></p>
Arvados - Idea #13484 (New): Support multiple load-balanced API server nodes
https://dev.arvados.org/issues/13484
2018-05-14T21:07:29Z
Tom Clegg
tom@curii.com
<p>Background: the Rails API server application becomes a performance bottleneck during heavy load, e.g., when hundreds of containers/nodes are running. There are some ways to respond to this -- use a bigger/faster machine, adjust logging configs, move postgresql to a different machine -- but it would be much better if the operator could add API server nodes to increase capacity. However, there are some parts of the code base that assume there's only one API server.</p>
<p>In this issue, we remove those barriers, so a site admin can safely add and remove additional API servers and route traffic to them with a load balancer.</p>
<p>(However, multi-API-server installations are not expected to support crunch1 jobs.)</p>
Known/suspected issues:
<ul>
<li>Job validation code assumes git repositories are stored in the local filesystem (todo: confirm this only affects crunch1)</li>
<li>Audit log cleanup code uses flock() to avoid wastefully running concurrent cleanup threads (todo: confirm concurrent cleanup threads are harmless, and/or use a database lock instead)</li>
<li>Sample DNS update scripts (triggered by "node ping") assume the API host is the DNS server (todo: offer a sample DNS update strategy suitable for multiple nodes).</li>
</ul>