Arvados: Issueshttps://dev.arvados.org/https://dev.arvados.org/favicon.ico?15576888422022-01-24T16:49:33ZArvados
Redmine Arvados - Feature #18668 (In Progress): [deduplication report] add project supporthttps://dev.arvados.org/issues/186682022-01-24T16:49:33ZWard Vandewegeward@curii.com
<ul>
<li>Add support for project uuids</li>
<li>Add tests</li>
<li>Add documentation</li>
</ul> Arvados - Task #18616 (New): Reviewhttps://dev.arvados.org/issues/186162022-01-06T16:06:36ZPeter Amstutzpeter.amstutz@curii.comArvados - Task #18609 (New): Reviewhttps://dev.arvados.org/issues/186092022-01-06T15:56:12ZLucas Di Pentimalucas.dipentima@curii.comArvados - Bug #18278 (New): [k8s] start using an ingresshttps://dev.arvados.org/issues/182782021-10-19T19:52:53ZWard Vandewegeward@curii.com
<p>As reported in <a class="external" href="https://forum.arvados.org/t/deploy-arvados-on-gke">https://forum.arvados.org/t/deploy-arvados-on-gke</a>, the GKE k8s setup needs some work.</p> Arvados - Task #18235 (New): Reviewhttps://dev.arvados.org/issues/182352021-09-29T15:33:42ZPeter Amstutzpeter.amstutz@curii.comArvados - Feature #17313 (New): [Documentation] improve federation documentationhttps://dev.arvados.org/issues/173132021-02-02T14:45:51ZWard Vandewegeward@curii.com
<p>The Architecture page at <a class="external" href="https://doc.arvados.org/v2.1/architecture/federation.html">https://doc.arvados.org/v2.1/architecture/federation.html</a> and the admin section at <a class="external" href="https://doc.arvados.org/v2.1/admin/federation.html">https://doc.arvados.org/v2.1/admin/federation.html</a> have considerable overlap, but neither clearly lays out the types of federation and what some example use cases are.</p>
<p>We should upgrade the Architecture page to an entire Federation section, with these pages:</p>
<ul>
<li>Overview</li>
<li>Peer federation</li>
<li>Login federation</li>
<li>public-data access federation (need a new term for this type!)</li>
<li>Federation mechanics (move the "federation and signatures" section from <a class="external" href="https://doc.arvados.org/v2.1/architecture/manifest-format.html#federationsignatures">https://doc.arvados.org/v2.1/architecture/manifest-format.html#federationsignatures</a> here; also this is where some of the text from <a class="external" href="https://doc.arvados.org/v2.1/architecture/federation.html">https://doc.arvados.org/v2.1/architecture/federation.html</a> will go)</li>
</ul>
<p>For each federation type the page needs to clarify:</p>
<ul>
<li>when this type of federation is appropriate</li>
<li>how to configure the clusters involved</li>
<li>what the functional impact is (e.g. multisite search works in this particular way, login works like this, what happens when a user on cluster a requests a uuid that lives on another cluster, what happens when a workflow does that, etc)</li>
<li>security considerations</li>
</ul>
<p>Needless to say, it's fine to say "not yet implemented" for stuff that does not work.</p> Arvados - Bug #16832 (New): replace linkchecker in our build environmenthttps://dev.arvados.org/issues/168322020-09-10T19:34:47ZWard Vandewegeward@curii.com
<p>It's Python 2 only, and appears unmaintained upstream.</p>
<p>When done, make sure to update </p>
<pre><code>lib/install/deps.go</code></pre>
<p>so that </p>
<pre><code>arvados-server install -type test</code></pre>
<p>keeps doing the right thing.</p> Arvados - Feature #16389 (In Progress): [k8s] add support for Amazon EKShttps://dev.arvados.org/issues/163892020-04-30T16:10:24ZWard Vandewegeward@curii.com
<p>Look at <a class="external" href="https://gitlab.com/iidsgt/arv-helm">https://gitlab.com/iidsgt/arv-helm</a></p> Tapestry - Feature #2231 (New): add flag to choose locale https://dev.arvados.org/issues/22312014-02-26T12:34:38ZWard Vandewegeward@curii.comTapestry - Bug #1836 (New): when Tapestry fails to send e-mail, user should not be presented with...https://dev.arvados.org/issues/18362014-01-05T09:35:18ZWard Vandewegeward@curii.comTapestry - Feature #1632 (New): detect missing configuration variables on startuphttps://dev.arvados.org/issues/16322013-11-20T12:19:38ZWard Vandewegeward@curii.comTapestry - Bug #1615 (New): People who are not enrolled should not be able to use the 'withdraw' ...https://dev.arvados.org/issues/16152013-11-07T15:15:43ZAnonymousTapestry - Bug #1520 (New): auto-enrollment feature should be configurablehttps://dev.arvados.org/issues/15202013-09-20T13:33:49ZWard Vandewegeward@curii.com
<p>Also, if you promote someone to the last step, without having them eligible first, and then make them eligible, and then revisit the last step, they will see - incorrectly - that they are still ineligible. That needs to be fixed as part of this issue</p> GET-Evidence - Bug #1380 (New): slowness when accessing /genomes as admin userhttps://dev.arvados.org/issues/13802013-02-04T14:36:17ZWard Vandewegeward@curii.com
<p>On Mon, Feb 04, 2013 at 12:11:23PM -0500, Madeleine Ball wrote:</p>
<blockquote>
<p>The problem isn't present when I log in using Google OpenID rather than<br /><a class="external" href="http://www.madprime.org">www.madprime.org</a>.</p>
<p>The problem is present when I log in using <a class="external" href="http://www.madprime.org">www.madprime.org</a> in an incognito<br />window.</p>
</blockquote>
<p>That's a red herring, I think. Unless your Google OpenID is not an admin<br />user?</p>
<p>The problem had to do with slow name resolving on the Keep nodes. I fixed<br />that.</p>
<p>I saw the timeouts as an admin, but not as an ordinary user.</p>
<p>Get-Evidence apparently does some really expensive lookups on the genomes<br />page when logged in as an admin - it seems to iterate over every item in the<br />/home/trait/upload folder (currently 1300+). That is a design bug.</p>
<p>It also requests the job output from Keep if the records on its disk for an<br />upload do not entirely line up.</p>
<p>It does that check on every request for the genomes page (this is a design<br />bug, these kinds of checks should be done out of band), and is not able to<br />resolve the inconsistency (this is an ordinary bug). So... it keeps retrying<br />to fix those datasets by checking in with Keep. On every load of the genomes<br />page. There are 340 uploads in this situation. You can imagine that makes<br />things slow.</p>
<p>I've temporarily disabled the check that is broken, and the genomes page now<br />loads in about 25 seconds. Still pretty terrible, but better than before.</p> GET-Evidence - Bug #1209 (New): slowness accessing http://evidence.personalgenomes.org/hu43860Chttps://dev.arvados.org/issues/12092012-11-07T10:56:55ZWard Vandewegeward@curii.com
<p>This was reported in RT ticket <a class="issue tracker-1 status-1 priority-4 priority-default" title="Bug: Trait-o-matic GET-E importer "AttributeError: 'tuple' object has no attribute 'remove'" (New)" href="https://dev.arvados.org/issues/500">#500</a></p>