Output glob "./" doesn't work as output from CWL workflow
Hello! Found a problem while trying return directory from cwl. Tested the following cwl on both cwl-runner and arvados-cwl-runner. According to documentation both support cwl v1.0. On cwl-runner all works fine: receive file according to the parameter set in $(inputs.fileName).
When trying to run the same cwl with arvados-cwl-runner get an error:
WorkflowException: Error collecting output for parameter 'dir': Did not find output file with glob pattern: '['./']'
Example that I tested
cwlVersion: v1.0 class: CommandLineTool hints: DockerRequirement: dockerPull: ubuntu baseCommand: echo arguments: ["return dir"] requirements: InitialWorkDirRequirement: listing: - entryname: $(inputs.fileName) entry: Some text inside the file inputs: fileName: type: string outputs: dir: type: Directory outputBinding: glob: "./"
#2 Updated by Tom Morris over 3 years ago
- Subject changed from Set glob to return Directory as output form cwl workflow to Output glob "./" doesn't work as output from CWL workflow
- Target version set to Arvados Future Sprints
Since both forms ("./" and ".") are equivalent, it seems like they should both be supported.