Feature #1080

Add non-reference variant counts to metadata

Added by Anonymous almost 7 years ago.

Status:
New
Priority:
Normal
Assigned To:
Target version:
-
Start date:
Due date:
% Done:

0%

Estimated time:
Billable:
Estimatedhours:
Hours:
Totalhours:
Resolution:
Story points:
-

Description

Add counts of number of variants to metadata information.

We'd like to use the metadata (metadata.json) to generate aggregate reports on our genomic data. VCF files (e.g. produced for 23andme exomes) don't show up as having much "coverage" due to the lack of reference annotation, but they do have many non-reference variant calls. So, in addition to coverage statistics, we'd like to have metadata reporting the number of non-reference variants in a genetic data file. It might also be useful to create whole genome and coding numbers (as with the coverage).

Also available in: Atom PDF