Story #11159

[GA4GH] Import from tool registry API

Added by Peter Amstutz 8 months ago. Updated about 1 month ago.

Status:NewStart date:
Priority:NormalDue date:
Assignee:-% Done:

0%

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Target version:Arvados Future Sprints
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Velocity based estimate-

Description

Support import of tools from tool registry API.

https://github.com/ga4gh/tool-registry-schemas

Initial capability: add support using arvados-cwl-runner at the command line to fetch a CWL file from GA4GH tool API over HTTP and import it to Arvados with existing --create-workflow feature.

Could use the resolve_ga4gh_tool function from this branch:

https://github.com/common-workflow-language/cwltool/commit/1efcfc77a640fe15906fd724ba498c439be98d37

History

#1 Updated by Peter Amstutz 8 months ago

  • Description updated (diff)

#2 Updated by Peter Amstutz 8 months ago

  • Description updated (diff)

#3 Updated by Peter Amstutz 8 months ago

  • Description updated (diff)

#4 Updated by Tom Morris about 1 month ago

  • Target version set to Arvados Future Sprints

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