Story #11159

[GA4GH] Import from tool registry API

Added by Peter Amstutz 10 months ago. Updated 3 months ago.

Status:
New
Priority:
Normal
Assigned To:
-
Category:
-
Target version:
Start date:
Due date:
% Done:

0%

Estimated time:
Story points:
-

Description

Support import of tools from tool registry API.

https://github.com/ga4gh/tool-registry-schemas

Initial capability: add support using arvados-cwl-runner at the command line to fetch a CWL file from GA4GH tool API over HTTP and import it to Arvados with existing --create-workflow feature.

Could use the resolve_ga4gh_tool function from this branch:

https://github.com/common-workflow-language/cwltool/commit/1efcfc77a640fe15906fd724ba498c439be98d37

History

#1 Updated by Peter Amstutz 10 months ago

  • Description updated (diff)

#2 Updated by Peter Amstutz 10 months ago

  • Description updated (diff)

#3 Updated by Peter Amstutz 10 months ago

  • Description updated (diff)

#4 Updated by Tom Morris 3 months ago

  • Target version set to Arvados Future Sprints

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