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Idea #11159

open

[GA4GH] Import from tool registry API

Added by Peter Amstutz about 7 years ago. Updated 2 months ago.

Status:
New
Priority:
Normal
Assigned To:
-
Category:
-
Target version:
Future
Start date:
Due date:
Story points:
-
Release:
Postponed
Release relationship:
Auto

Description

Support import of tools from tool registry API.

https://github.com/ga4gh/tool-registry-schemas

Initial capability: add support using arvados-cwl-runner at the command line to fetch a CWL file from GA4GH tool API over HTTP and import it to Arvados with existing --create-workflow feature.

Could use the resolve_ga4gh_tool function from this branch:

https://github.com/common-workflow-language/cwltool/commit/1efcfc77a640fe15906fd724ba498c439be98d37

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