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Feature #11442

open

[CWL] Resolve symbolic names to collections

Added by Peter Amstutz over 7 years ago. Updated 8 months ago.

Status:
New
Priority:
Normal
Assigned To:
-
Category:
-
Target version:
Story points:
-
Release:
Release relationship:
Auto

Description

SDK method to resolve paths in the form of (proposed) groupname/projectname/collectionname/filename to UUID and PDH.

(Consider URL naming scheme such as arv://site/groupname/projectname/collectionname/filename eg
arv://qr1hi/Peter Amstutz/tutorial/bwa reference/reference.fasta

Also specify naming scheme for UUIDs.

Arvados-cwl-runner allows users to provide uuids and symbolic names in input documents. On execution, record name (if available), UUID and PDH.

Where possible, paths should be consistent with arv-mount/keep-web paths.


Related issues

Related to Arvados - Feature #14322: [CWL] Accept collection uuid in inputResolvedPeter Amstutz03/13/2019Actions
Actions #1

Updated by Peter Amstutz over 7 years ago

  • Description updated (diff)
Actions #2

Updated by Tom Morris about 7 years ago

  • Target version set to Arvados Future Sprints
Actions #3

Updated by Peter Amstutz about 6 years ago

  • Target version changed from Arvados Future Sprints to To Be Groomed

tom: It's sensible for a client like a-c-r to resolve uuid->pdh itself to avoid races, but it should still pass the uuid as well, for the sake of meaningful provenance. That's the part we're getting wrong now (on both sides -- it looks like the API will blithely clobber the pdh with the current pdh if a client is diligent enough to supply both, and the container spec says you can supply uuid or pdh -- with italics, even).

Actions #4

Updated by Peter Amstutz about 6 years ago

  • Subject changed from [SDK] Resolve symbolic names to uuid/pdh (cwl + other tools) to [CWL] Resolve uuid or symbolic names to pdh
  • Description updated (diff)
Actions #5

Updated by Peter Amstutz about 6 years ago

  • Subject changed from [CWL] Resolve uuid or symbolic names to pdh to [CWL] Resolve symbolic names to collections
Actions #6

Updated by Tom Clegg about 6 years ago

  • Related to Feature #14322: [CWL] Accept collection uuid in input added
Actions #7

Updated by Peter Amstutz over 3 years ago

  • Target version deleted (To Be Groomed)
Actions #8

Updated by Peter Amstutz over 1 year ago

  • Release set to 60
Actions #9

Updated by Peter Amstutz 8 months ago

  • Target version set to Future
Actions

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