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Idea #13192

closed

Update SGLF sanity checking CWL and parallelize

Added by Abram Connelly about 6 years ago. Updated about 6 years ago.

Status:
Resolved
Priority:
Normal
Assigned To:
Abram Connelly
Target version:
-
Start date:
03/14/2018
Due date:
Story points:
-

Description

There is a new sglf-check program to do some sanity checks on an SGLF file. Incorporate this program into the CWL sglf-sanity-check pipeline.

Also, the CWL sglf-sanity-check pipeline is serial. Parallelize this workflow to reduce clock time of the check.

I think the best method is to split in groups of tilepaths, so process N tilepaths per node allocated.

Subtasks 1 (0 open — 1 closed)

Task #13229: code reviewResolvedAbram Connelly03/14/2018Actions
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