https://dev.arvados.org/https://dev.arvados.org/favicon.ico?15576888422018-06-11T17:24:09ZArvadosArvados - Bug #13491: arvbox deadlocks on parallel usagehttps://dev.arvados.org/issues/13491?journal_id=633412018-06-11T17:24:09ZWard Vandewegeward@curii.com
<ul><li><strong>Related to</strong> <i><a class="issue tracker-1 status-3 priority-4 priority-default closed" href="/issues/13594">Bug #13594</a>: PG::TRDeadlockDetected when running cwl tests in parallel</i> added</li></ul> Arvados - Bug #13491: arvbox deadlocks on parallel usagehttps://dev.arvados.org/issues/13491?journal_id=633432018-06-11T17:25:41ZWard Vandewegeward@curii.com
<ul><li><strong>Status</strong> changed from <i>New</i> to <i>Resolved</i></li><li><strong>Assigned To</strong> set to <i>Ward Vandewege</i></li><li><strong>Target version</strong> set to <i>2018-06-20 Sprint</i></li></ul><p>Hi Michael,</p>
<p>I ran into this as well in a different context. We worked on this bug in ticket <a class="issue tracker-1 status-3 priority-4 priority-default closed" title="Bug: PG::TRDeadlockDetected when running cwl tests in parallel (Resolved)" href="https://dev.arvados.org/issues/13594">#13594</a>, and it is now fixed as of version 1.1.4.20180608190512-8 of the arvados-api-server package.</p>
<p>Thanks,<br />Ward.</p> Arvados - Bug #13491: arvbox deadlocks on parallel usagehttps://dev.arvados.org/issues/13491?journal_id=634062018-06-12T19:49:42ZMichael Crusoe
<ul></ul><p>Ward Vandewege wrote:</p>
<blockquote>
<p>Hi Michael,</p>
<p>I ran into this as well in a different context. We worked on this bug in ticket <a class="issue tracker-1 status-3 priority-4 priority-default closed" title="Bug: PG::TRDeadlockDetected when running cwl tests in parallel (Resolved)" href="https://dev.arvados.org/issues/13594">#13594</a>, and it is now fixed as of version 1.1.4.20180608190512-8 of the arvados-api-server package.</p>
<p>Thanks,<br />Ward.</p>
</blockquote>
<p>Great! Shall I update ci.commonwl.org to run the tests in parallel, or when will be incorporated in the arvados/arvbox-demo:latest container ?</p> Arvados - Bug #13491: arvbox deadlocks on parallel usagehttps://dev.arvados.org/issues/13491?journal_id=634082018-06-12T20:28:40ZWard Vandewegeward@curii.com
<ul></ul><p>Michael Crusoe wrote:</p>
<blockquote>
<p>Ward Vandewege wrote:</p>
<blockquote>
<p>Hi Michael,</p>
<p>I ran into this as well in a different context. We worked on this bug in ticket <a class="issue tracker-1 status-3 priority-4 priority-default closed" title="Bug: PG::TRDeadlockDetected when running cwl tests in parallel (Resolved)" href="https://dev.arvados.org/issues/13594">#13594</a>, and it is now fixed as of version 1.1.4.20180608190512-8 of the arvados-api-server package.</p>
<p>Thanks,<br />Ward.</p>
</blockquote>
<p>Great! Shall I update ci.commonwl.org to run the tests in parallel, or when will be incorporated in the arvados/arvbox-demo:latest container ?</p>
</blockquote>
<p>The fix is already present in the current version of the arvados/arvbox-demo:latest image published on Docker Hub, so we could try on ci.commonwl.org. There is a point in the CWL test suite that requires a number of compute nodes to be available that is 2x the concurrency number given with the -j parameter. Certainly for small numbers of -j. So if you want to use -j4, make sure arvbox has 8 compute 'nodes' available.</p> Arvados - Bug #13491: arvbox deadlocks on parallel usagehttps://dev.arvados.org/issues/13491?journal_id=647662018-07-23T18:52:33ZTom Morristfmorris@veritasgenetics.com
<ul><li><strong>Release</strong> set to <i>13</i></li></ul>