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Feature #13540

closed

Custom pluggable viewers for certain data types

Added by Moritz Gilsdorf about 4 years ago. Updated over 3 years ago.

Status:
Closed
Priority:
Normal
Category:
-
Target version:
Start date:
11/29/2018
Due date:
% Done:

0%

Estimated time:
Story points:
3.0

Description

Being able to implement custom data viewers/actions for different data types would be a useful feature.

Examples:
  • Open BAM file with IGV or JBrowse
  • Send data files to another REST API (e.g. upload VCF data into a genomics data management platform)

Related issues

Related to Arvados Workbench 2 - Feature #14563: [Data operations] Preview of image files in a collection files treeClosedMichał Kłobukowski

Actions
Actions #1

Updated by Moritz Gilsdorf about 4 years ago

Apart from being able to do these more advanced data viewing operations it would be good to be able to easily configure file extensions that can be just opened in the browser window. There are many small ascii based file formats using all kinds of file extensions.

Actions #2

Updated by Chrystian Klingenberg almost 4 years ago

  • Target version set to sprint 13 (lucky number)
Actions #3

Updated by Chrystian Klingenberg almost 4 years ago

  • Story points set to 3.0
Actions #4

Updated by Daniel Kos over 3 years ago

  • Target version changed from sprint 13 (lucky number) to sprint 14
Actions #5

Updated by Michał Kłobukowski over 3 years ago

  • Status changed from New to In Progress
  • Assigned To set to Michał Kłobukowski
Actions #6

Updated by Michał Kłobukowski over 3 years ago

  • Related to Feature #14563: [Data operations] Preview of image files in a collection files tree added
Actions #7

Updated by Michał Kłobukowski over 3 years ago

  • Status changed from In Progress to Feedback
Actions #8

Updated by Michał Kłobukowski over 3 years ago

  • Status changed from Feedback to In Progress
Actions #9

Updated by Michał Kłobukowski over 3 years ago

Custom pluggable viewers are implemented as file's context menu actions that redirect a user to a third party app url with a search param that contains selected file url. Configuration file is used the same way as controlled vocabulary file. See readme.md for details.

Actions #10

Updated by Michał Kłobukowski over 3 years ago

  • Status changed from In Progress to Resolved
Actions #11

Updated by Pawel Kowalczyk over 3 years ago

  • Status changed from Resolved to Closed
Actions

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