Idea #13823
closedPackage Arvados for Ubuntu Bionic Beaver 18.04 LTS
Description
It would be helpful to have arvados apt packages for ubuntu bionic, the "new" LTS release.
One motivating reason is that none of the currently supported Debian/Ubuntu releases have a slurm package with functionality new enough to support the priority ranges Arvados uses when large number of containers are run (see issue 13489).
Bionic has slurm 17.11.2 which would alleviate this issue.
Related issues
Updated by Tom Morris about 6 years ago
- Tracker changed from Bug to Idea
- Subject changed from package arvados for ubuntu bionic to Package Arvados for Ubuntu Bionic Beaver 18.04 LTS
- Target version set to To Be Groomed
Updated by Tom Clegg about 6 years ago
Some work in progress on 13823-bionic.
easy_install3 has disappeared, and we're supposed to use "pip3 install" instead. This will be easy to migrate if it turns out "pip install" and "pip3 install" work for all older releases, too. Testing that.
Updated by Tom Clegg about 6 years ago
With the pip3 change I can build bionic packages, but the python packages have dependency problems.
"Depends: python-ws4py (< 0.4) but 0.4.2+dfsg1-2 is to be installed"
(python-arvados-python-client depends on ws4py<0.4 because tests failed with 0.4.1 -- but ubuntu:bionic ships 0.4.2)
SDK tests seem to pass with ws4py 0.4.2.
Updated by Tom Clegg about 6 years ago
Same problem with ruamel.yaml: bionic ships 0.15.34-1 but sdk/python requires <0.15.
python-arvados-python-client : Depends: python-ruamel.yaml (< 0.15) but 0.15.34-1 is to be installed
d015f8bd07c4890b3084306a6cdd67aeda7f81f0 introduced the <0.15 part; #13435 suggests we copied it from cwltool, which has since changed to <0.16 in 7f8a62c7b4f63480fb187fc7def4c6e3695e669c.
Updated by Tom Clegg about 6 years ago
13823-bionic @ f8f3944e6ba1f470eedf48aa609a50c780fe4b6d
...successfully produces packages for all distros on my dev box. Haven't tried test-packages.
Incidental changes (see commit comments for more details):- switch from cure-fpm to fpm
- upgrade ws4py and ruamel.yaml python deps
Updated by Tom Clegg about 6 years ago
- Related to Bug #13435: a-c-r and python SDK ruamel.yaml versioning added
Updated by Tom Clegg about 6 years ago
- Category deleted (
Deployment) - Target version deleted (
To Be Groomed)
Updated by Tom Morris about 6 years ago
- Assigned To set to Tom Clegg
- Target version set to 2018-08-15 Sprint
Apparently this got urgently pulled onto the current sprint.
Updated by Tom Morris about 6 years ago
- Target version changed from 2018-08-15 Sprint to Arvados Future Sprints
Updated by Ward Vandewege about 6 years ago
I reviewed and made some more improvements on this branch, latest at bc97d806fa1fb15e49cefe819f00089ebc33d376
- fixed package testing for bionic
- merged latest master
From my perspective this is now ready for merging. Then:
- add the build steps to CI to build, upload and publish the packages in -dev
- do some functional testing (i.e. do the packages actually create a working version of Arvados?) on a bionic system
- update the https://doc.arvados.org/install/install-manual-prerequisites.html page to list bionic as a supported distribution
Updated by Ward Vandewege almost 6 years ago
This was merged, and the necessary CI changes have been made. Packages have been published to the bionic-dev repo, and will be going forward.
Next step is a functional test.
Updated by Tom Morris almost 6 years ago
This was tagged for the upcoming release, but I can't tell if it's done or not. Merged, but needs to be tested still?
Updated by Tom Morris almost 6 years ago
- Related to Idea #14483: Update ruaml version for a-c-r added
Updated by Tom Morris almost 6 years ago
- Target version changed from Arvados Future Sprints to 2018-11-28 Sprint
Updated by Ward Vandewege almost 6 years ago
Tom Morris wrote:
This was tagged for the upcoming release, but I can't tell if it's done or not. Merged, but needs to be tested still?
Everything is done in this ticket, but there is a known issue with a cwltool/ruamel version incompatibility with bionic, which is being handled in #14483. Once that is merged, this should work, and we can test our 18.04 packaging.
Updated by Ward Vandewege almost 6 years ago
Well, the ruamel issue is resolved, but there's one more dependency issue, now with python-avro:
root@1aa90ea77c25:/etc/apt/sources.list.d# apt-get install python-schema-salad Reading package lists... Done Building dependency tree Reading state information... Done Some packages could not be installed. This may mean that you have requested an impossible situation or if you are using the unstable distribution that some required packages have not yet been created or been moved out of Incoming. The following information may help to resolve the situation: The following packages have unmet dependencies: python-schema-salad : Depends: python-avro (< 1.8.2) but 1.8.2+dfsg-1 is to be installed E: Unable to correct problems, you have held broken packages. root@1aa90ea77c25:/etc/apt/sources.list.d# apt-cache policy python-avro python-avro: Installed: (none) Candidate: 1.8.2+dfsg-1 Version table: 1.8.2+dfsg-1 500 500 http://archive.ubuntu.com/ubuntu bionic/universe amd64 Packages 1.8.1-2 500 500 http://apt.arvados.org bionic-dev/main amd64 Packages
Updated by Tom Clegg over 5 years ago
- Assigned To changed from Tom Clegg to Ward Vandewege
- update schema-salad so it works with avro≥1.8.2
- update schema-salad to use the avro-cwl fork in python2 (avro-cwl is at 1.8.4, but it's used by schema-salad only when in python3)
- update a-c-r packaging to use virtualenv for python deps
Updated by Ward Vandewege over 5 years ago
- Target version changed from 2018-11-28 Sprint to 2018-12-12 Sprint
Updated by Tom Morris over 5 years ago
- Target version changed from 2018-12-12 Sprint to 2018-12-21 Sprint
Updated by Tom Morris over 5 years ago
- Target version changed from 2018-12-21 Sprint to 2019-01-16 Sprint
Updated by Tom Morris over 5 years ago
- Target version changed from 2019-01-16 Sprint to 2019-01-30 Sprint
Updated by Ward Vandewege over 5 years ago
- Target version changed from 2019-01-30 Sprint to 2019-02-13 Sprint
Updated by Ward Vandewege over 5 years ago
- Target version changed from 2019-02-13 Sprint to 2019-02-27 Sprint
Updated by Tom Morris over 5 years ago
- Target version changed from 2019-02-27 Sprint to 2019-03-13 Sprint
Updated by Ward Vandewege over 5 years ago
- Status changed from In Progress to Resolved
Packages have been available for a while, and I've confirmed that they work in our Arvados on Kubernetes environment.