Arvados

I used the following simple cwl to do gzip using initial work dir.

gzip.cwl

cwlVersion: v1.0
class: CommandLineTool
requirements:
  DockerRequirement:
    dockerPull: arvados/jobs
  InitialWorkDirRequirement:
    listing:
      - $(inputs.infile)
inputs:
  infile: File
outputs:
  outfile:
    type: File
    outputBinding:
      glob: "*.gz" 
baseCommand: gzip
arguments:
  - $(inputs.infile.basename)

Run: https://workbench.e51c5.arvadosapi.com/container_requests/e51c5-xvhdp-uzdzlsqwwodcz0e

Error message:

gzip: foo: Device or resource busy