Bug #14723

[CWL] File that should appear multiple times in output collection only appears once

Added by Peter Amstutz 2 months ago. Updated 30 days ago.

Status:
New
Priority:
Normal
Assigned To:
-
Category:
-
Target version:
Start date:
Due date:
% Done:

0%

Estimated time:
Story points:
-

Description

A user has reported a situation where, in producing CWL output, there are directories that should contain the same file, however the file only appears in one directory. The theory is that the source files get mapped to exactly one destination in the output collection (picked arbitrarily) instead of copied to every location in the destination collection.

Specifically, make_output_collection uses NoFollowPathMapper() to map each file to exactly one destination. It probably ought to work the other way, mapping each destination to an input file.

History

#1 Updated by Peter Amstutz 2 months ago

  • Status changed from New to In Progress

#2 Updated by Peter Amstutz 2 months ago

  • Status changed from In Progress to New

#3 Updated by Peter Amstutz 2 months ago

  • Description updated (diff)

#4 Updated by Peter Amstutz 2 months ago

  • Description updated (diff)

#5 Updated by Peter Amstutz 2 months ago

  • Description updated (diff)

#6 Updated by Peter Amstutz 30 days ago

  • Target version set to To Be Groomed

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