Support #14906

[SDK] Maintain Arvados SDKs in Bioconda

Added by Peter Amstutz 20 days ago. Updated 20 days ago.

Status:
New
Priority:
Normal
Assigned To:
-
Category:
-
Target version:
Start date:
Due date:
% Done:

0%

Estimated time:
Story points:
-

Description

Bioconda is a channel for the conda package manager specializing in bioinformatics software. Conda is a rootless package manager that is popular in scientific computing environments where neither root nor containers are available. Bioconda packages are also automatically added to Biocontainers (http://biocontainers.pro) via Mulled (http://biocontainers.pro/docs/developer-manual/developer-intro/)

https://bioconda.github.io/

Some Arvados components are already packaged for it, originally contributed by Brad Chapman:

https://github.com/bioconda/bioconda-recipes/tree/master/recipes/arvados-cli

https://github.com/bioconda/bioconda-recipes/tree/master/recipes/arvados-cwl-runner

https://github.com/bioconda/bioconda-recipes/tree/master/recipes/arvados-python-client

We should support these directly so that they don't get out of date.

History

#1 Updated by Peter Amstutz 20 days ago

  • Status changed from New to In Progress

#2 Updated by Peter Amstutz 20 days ago

  • Description updated (diff)

#3 Updated by Peter Amstutz 20 days ago

  • Status changed from In Progress to New

#4 Updated by Peter Amstutz 20 days ago

  • Subject changed from [SDK] Arvados SDKs in Bioconda to [SDK] Maintain Arvados SDKs in Bioconda

#5 Updated by Brad Chapman 20 days ago

This would be great and happy to help. You've already got the relevant recipes listed above. Bioconda is an open project so they'd be open to anyone contributing and docs are here:

https://bioconda.github.io/contributing.html

Let me know how I can help with this.

#6 Updated by Tom Morris 20 days ago

  • Target version set to To Be Groomed

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