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[SDK] Maintain Arvados SDKs in Bioconda

Added by Peter Amstutz about 5 years ago. Updated 27 days ago.

Status:
New
Priority:
Normal
Assigned To:
-
Category:
-
Target version:
Due date:
Story points:
-
Release:
Release relationship:
Auto

Description

Bioconda is a channel for the conda package manager specializing in bioinformatics software. Conda is a rootless package manager that is popular in scientific computing environments where neither root nor containers are available. Bioconda packages are also automatically added to Biocontainers (http://biocontainers.pro) via Mulled (http://biocontainers.pro/docs/developer-manual/developer-intro/)

https://bioconda.github.io/

Some Arvados components are already packaged for it, originally contributed by Brad Chapman:

https://github.com/bioconda/bioconda-recipes/tree/master/recipes/arvados-cli

https://github.com/bioconda/bioconda-recipes/tree/master/recipes/arvados-cwl-runner

https://github.com/bioconda/bioconda-recipes/tree/master/recipes/arvados-python-client

We should support these directly so that they don't get out of date.

Actions #1

Updated by Peter Amstutz about 5 years ago

  • Status changed from New to In Progress
Actions #2

Updated by Peter Amstutz about 5 years ago

  • Description updated (diff)
Actions #3

Updated by Peter Amstutz about 5 years ago

  • Status changed from In Progress to New
Actions #4

Updated by Peter Amstutz about 5 years ago

  • Subject changed from [SDK] Arvados SDKs in Bioconda to [SDK] Maintain Arvados SDKs in Bioconda
Actions #5

Updated by Brad Chapman about 5 years ago

This would be great and happy to help. You've already got the relevant recipes listed above. Bioconda is an open project so they'd be open to anyone contributing and docs are here:

https://bioconda.github.io/contributing.html

Let me know how I can help with this.

Actions #6

Updated by Tom Morris about 5 years ago

  • Target version set to To Be Groomed
Actions #7

Updated by Peter Amstutz over 2 years ago

  • Target version deleted (To Be Groomed)
Actions #8

Updated by Peter Amstutz about 1 year ago

  • Release set to 60
Actions #9

Updated by Peter Amstutz 27 days ago

  • Target version set to Future
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