Bug #15080: Installing arvados-cwl-runner==1.3.1 from PyPi is broken - Arvados

Bug #15080

Installing arvados-cwl-runner==1.3.1 from PyPi is broken

Added by Peter Amstutz 5 months ago. Updated 4 months ago.

Status:

Resolved

Priority:

Normal

Assigned To:

Lucas Di Pentima

Category:

Target version:

2019-05-08 Sprint

Start date:

04/10/2019

Due date:

% Done:

100%

Estimated time:

(Total: 0.00 h)

Story points:

Release:

Arvados 1.3.2

Release relationship:

Auto

Description

arvados-cwl-runner==1.3.1 depends on ciso8601 < 2.0.0 but has an open-ended dependency on arvados-python-client, so by default pip installs the latest arvados-python-client which depends on ciso8601 >= 2.0.0, resulting in a broken install due to the package version conflict.

Solutions:

Make a point release to PyPi of arvados-cwl-runner==1.3.1.1 which has an added version pin to arvados-python-client==1.3.1
Stop uploading dev versions to PyPi
Future stable releases have corresponding dependencies pinned

Subtasks

Related issues

Associated revisions

Revision eab2d735
Added by Lucas Di Pentima 4 months ago

Merge branch '15080-acr131-deps-fix' into 1.3-dev
Refs #15080

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

Revision 72ef9770 (diff)
Added by Peter Amstutz 4 months ago

Change arvados-python-client to >=1.3.1, <=1.3.99

refs #15080

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

History

#1 Updated by Peter Amstutz 5 months ago

Status changed from New to In Progress

#2 Updated by Peter Amstutz 5 months ago

Subject changed from Installing arvados-cwl-runner from PyPi is broken to Installing arvados-cwl-runner==1.3.1 from PyPi is broken
Description updated (diff)
Status changed from In Progress to New

#3 Updated by Peter Amstutz 4 months ago

Target version changed from 2019-04-10 Sprint to 2019-04-24 Sprint

#4 Updated by Tom Morris 4 months ago

Assigned To set to Lucas Di Pentima

#6 Updated by Lucas Di Pentima 4 months ago

Status changed from New to In Progress

#7 Updated by Lucas Di Pentima 4 months ago

Updates at e823102cc - branch 15080-acr131-deps-fix

Branched off 1.3.1 & updated the python client dependency to arvados-python-client==1.3.1. This branch should be the hotfix for a-c-r 1.3.1.1

#8 Updated by Lucas Di Pentima 4 months ago

I'm having issues with using corresponding versions on dependencies. For example: making arvados-cwl-runner 1.3.1.20190404204419 ask for arvados-python-client 1.3.1.20190404204419 because when trying to build the package using virtualenv, pip tries to download the dependency that it isn't uploaded yet on PyPi.

I suppose it may be possible to ask pip to pre-install the dependency (arvados-python-client) from a local source, but I'm not sure yet if this means having to fiddle with docker volumes, to grant the docker container access to the .tar.gz file