Bug #15080: Installing arvados-cwl-runner==1.3.1 from PyPi is broken - Arvados

Bug #15080

Installing arvados-cwl-runner==1.3.1 from PyPi is broken

Added by Peter Amstutz 10 months ago. Updated 9 months ago.

Status:

Resolved

Priority:

Normal

Assigned To:

Lucas Di Pentima

Category:

Target version:

2019-05-08 Sprint

Start date:

04/10/2019

Due date:

% Done:

100%

Estimated time:

(Total: 0.00 h)

Story points:

Release:

Arvados 1.3.2

Release relationship:

Auto

Description

arvados-cwl-runner==1.3.1 depends on ciso8601 < 2.0.0 but has an open-ended dependency on arvados-python-client, so by default pip installs the latest arvados-python-client which depends on ciso8601 >= 2.0.0, resulting in a broken install due to the package version conflict.

Solutions:

Make a point release to PyPi of arvados-cwl-runner==1.3.1.1 which has an added version pin to arvados-python-client==1.3.1
Stop uploading dev versions to PyPi
Future stable releases have corresponding dependencies pinned

Subtasks

Related issues

Associated revisions

Revision eab2d735
Added by Lucas Di Pentima 10 months ago

Merge branch '15080-acr131-deps-fix' into 1.3-dev
Refs #15080

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

Revision 72ef9770 (diff)
Added by Peter Amstutz 9 months ago

Change arvados-python-client to >=1.3.1, <=1.3.99

refs #15080

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

History

#1 Updated by Peter Amstutz 10 months ago

Status changed from New to In Progress

#2 Updated by Peter Amstutz 10 months ago

Description updated (diff)
Status changed from In Progress to New
Subject changed from Installing arvados-cwl-runner from PyPi is broken to Installing arvados-cwl-runner==1.3.1 from PyPi is broken

#3 Updated by Peter Amstutz 10 months ago

Target version changed from 2019-04-10 Sprint to 2019-04-24 Sprint

#4 Updated by Tom Morris 10 months ago

Assigned To set to Lucas Di Pentima

#6 Updated by Lucas Di Pentima 10 months ago

Status changed from New to In Progress

#7 Updated by Lucas Di Pentima 10 months ago

Updates at e823102cc - branch 15080-acr131-deps-fix

Branched off 1.3.1 & updated the python client dependency to arvados-python-client==1.3.1. This branch should be the hotfix for a-c-r 1.3.1.1

#8 Updated by Lucas Di Pentima 10 months ago

I'm having issues with using corresponding versions on dependencies. For example: making arvados-cwl-runner 1.3.1.20190404204419 ask for arvados-python-client 1.3.1.20190404204419 because when trying to build the package using virtualenv, pip tries to download the dependency that it isn't uploaded yet on PyPi.

I suppose it may be possible to ask pip to pre-install the dependency (arvados-python-client) from a local source, but I'm not sure yet if this means having to fiddle with docker volumes, to grant the docker container access to the .tar.gz file