Bug #15183

[Workbench2] No errors reported when file is missing a block

Added by Tom Morris over 1 year ago. Updated 8 months ago.

Status:
New
Priority:
High
Assigned To:
-
Category:
-
Target version:
Start date:
Due date:
% Done:

0%

Estimated time:
Story points:
-

Description

When looking at collection su92l-4zz18-44qy35pg0lxshkf/cwl.input.yml the file is cwl.output.json is listed as containing 361 bytes, but when downloaded from Workbench, it produces a zero byte file, but without giving any error or warning.

$ md5sum keep/by_id/su92l-4zz18-44qy35pg0lxshkf/*
a890894f5a748d2a93440fd046c73069  keep/by_id/su92l-4zz18-44qy35pg0lxshkf/cwl.input.yml
md5sum: keep/by_id/su92l-4zz18-44qy35pg0lxshkf/cwl.output.json: Input/output error
d41d8cd98f00b204e9800998ecf8427e  keep/by_id/su92l-4zz18-44qy35pg0lxshkf/hu27FD1F_var-GS000034212-ASM.bed
b02868b9ac1264bd1f04b61d04518f57  keep/by_id/su92l-4zz18-44qy35pg0lxshkf/workflow.cwl

History

#1 Updated by Ward Vandewege 8 months ago

  • Subject changed from [Workbench] No errors reported when file is missing a block to [Workbench2] No errors reported when file is missing a block

I just tried this again:

  • from Chromium: workbench itself does not throw an error, but the download does error out with "Failed - File Incomplete".
  • from Firefox: workbench does not throw an error, but the download simply does not happen.

The behavior on workbench2 is identical. Changing this bug to be about workbench2, as workbench is close to EOL.

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