Project

General

Profile

Actions
Copy link

Bug #16083

closed

a-c-r run with workflow id doesn't work?

Added by Peter Amstutz over 4 years ago. Updated over 4 years ago.

Status:
Resolved
Priority:
Normal
Assigned To:
-
Category:
CWL
Target version:
-
Story points:
-

Description

From gitter:

dante@dante-ryzen:~/arvados/doc/user/cwl/bwa-mem$ /home/dante/arvados/sdk/cwl/bin/arvados-cwl-runner arv01-7fd4e-rpsv98hqd451ywz
2020-01-23 12:07:24 cwltool INFO: /home/dante/arvados/sdk/cwl/bin/arvados-cwl-runner 1.4.3, arvados-python-client 1.4.3, cwltool 1.0.20181217162649
2020-01-23 12:07:24 cwltool INFO: Resolved 'arv01-7fd4e-rpsv98hqd451ywz' to 'arvwf:arv01-7fd4e-rpsv98hqd451ywz#main'
2020-01-23 12:07:24 cwltool ERROR: I'm sorry, I couldn't load this CWL file, try again with --debug for more information.
The error was: expected a single document in the stream
  in "arvwf:arv01-7fd4e-rpsv98hqd451ywz", line 1, column 1
but found another document
  in "arvwf:arv01-7fd4e-rpsv98hqd451ywz", line 128, column 1
dante@dante-ryzen:~/arvados/doc/user/cwl/bwa-mem$
Actions
Copy link

Also available in: Atom PDF