Bug #16297

Dirent entry Expression not handled correctly according to CWL spec

Added by Stanislaw Adaszewski 10 months ago. Updated 6 months ago.

Status:
Resolved
Priority:
Normal
Assigned To:
Category:
CWL
Target version:
Start date:
Due date:
% Done:

0%

Estimated time:
Story points:
-

Description

  - class: InitialWorkDirRequirement
    listing:
      - entryname: 'script.sh'
        entry: |
          ${
            return 'abc';
          }

According to the spec the script.sh should contain abc instead it contains "abc" (i.e. JSON-encoding of the return string value instead of the string itself).


Related issues

Blocked by Arvados - Story #16353: 1.2 spec workResolved07/07/2020

History

#1 Updated by Stanislaw Adaszewski 10 months ago

- class: InitialWorkDirRequirement
  listing:
    - entryname: 'script.sh'
      entry: |
        ${
          return 'abc';
        }

#2 Updated by Peter Amstutz 9 months ago

  • Target version set to 2020-05-20 Sprint

#3 Updated by Peter Amstutz 9 months ago

  • Target version changed from 2020-05-20 Sprint to 2020-06-03 Sprint

#4 Updated by Peter Amstutz 8 months ago

  • Target version changed from 2020-06-03 Sprint to 2020-06-17 Sprint

#5 Updated by Peter Amstutz 8 months ago

  • Target version changed from 2020-06-17 Sprint to 2020-07-01 Sprint

#6 Updated by Peter Amstutz 7 months ago

  • Assigned To set to Peter Amstutz

#7 Updated by Peter Amstutz 7 months ago

  • Category set to CWL

#8 Updated by Peter Amstutz 7 months ago

  • Target version changed from 2020-07-01 Sprint to 2020-07-15

#9 Updated by Peter Amstutz 7 months ago

Being fixed in upstream https://github.com/common-workflow-language/cwltool/pull/1309

Will be fixed when Arvados updates cwltool dependency.

#10 Updated by Peter Amstutz 7 months ago

  • Status changed from New to In Progress

#11 Updated by Peter Amstutz 7 months ago

#12 Updated by Peter Amstutz 6 months ago

  • Target version changed from 2020-07-15 to 2020-08-12 Sprint

#13 Updated by Lucas Di Pentima 6 months ago

  • Description updated (diff)

#14 Updated by Peter Amstutz 6 months ago

  • Status changed from In Progress to Resolved

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