Idea #16305: Singularity support - Arvados Epics - Arvados

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Idea #16305

closed

Singularity support

Added by Peter Amstutz over 4 years ago. Updated about 3 years ago.

Status:

Resolved

Priority:

Normal

Assigned To:

-

Target version:

-

Start date:

01/01/2021

Due date:

09/30/2021

Story points:

-

Release:

Release relationship:

Auto

Related issues 9 (1 open — 8 closed)

	Related to Arvados - Idea #17241: Scoping/grooming Singularity support work	Resolved	Ward Vandewege				Actions
	Related to Arvados - Idea #17296: Singularity proof of concept	Resolved	Tom Clegg	05/27/2021			Actions
	Related to Arvados - Feature #17813: Cache docker-to-singularity image conversions	Resolved	Peter Amstutz	07/23/2021			Actions
	Related to Arvados - Bug #17816: singularity not setting working directory	Resolved	Peter Amstutz	07/14/2021			Actions
	Related to Arvados - Idea #17755: Test singularity support on a cloud cluster by running some real workflows	Resolved	Ward Vandewege	09/03/2021			Actions
	Related to Arvados - Idea #17857: Run WGS variant calling workflow on 9tee4 with LSF and Singularity enabled	Resolved	Ward Vandewege	08/27/2021			Actions
	Related to Arvados - Feature #17988: Enforce memory limits using Singularity + cloud	New					Actions
	Blocked by Arvados - Feature #17726: [singularity] add documentation	Resolved	Tom Clegg	08/05/2021			Actions
	Blocked by Arvados - Feature #18098: [crunch-run] should print out the runtime engine used	Resolved	Tom Clegg	09/22/2021			Actions

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#1

Updated by Peter Amstutz over 4 years ago

Start date set to 01/01/2021

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#2

Updated by Peter Amstutz over 4 years ago

Start date changed from 01/01/2021 to 03/01/2021
Due date set to 05/31/2021

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#3

Updated by Peter Amstutz over 4 years ago

Start date changed from 03/01/2021 to 04/01/2021

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#4

Updated by Peter Amstutz over 4 years ago

Start date changed from 04/01/2021 to 01/01/2021
Due date changed from 05/31/2021 to 03/31/2021

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#5

Updated by Peter Amstutz over 4 years ago

Start date changed from 01/01/2021 to 11/01/2020
Due date changed from 03/31/2021 to 01/31/2021

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#6

Updated by Peter Amstutz about 4 years ago

Start date changed from 11/01/2020 to 12/01/2020
Due date changed from 01/31/2021 to 02/28/2021

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#7

Updated by Peter Amstutz about 4 years ago

Start date changed from 12/01/2020 to 01/01/2021
Due date changed from 02/28/2021 to 03/31/2021

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#8

Updated by Peter Amstutz almost 4 years ago

Status changed from New to In Progress

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#9

Updated by Peter Amstutz almost 4 years ago

Related to Idea #17241: Scoping/grooming Singularity support work added

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#10

Updated by Peter Amstutz almost 4 years ago

Due date changed from 03/31/2021 to 04/30/2021

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#11

Updated by Peter Amstutz almost 4 years ago

Related to Idea #17296: Singularity proof of concept added

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#12

Updated by Peter Amstutz over 3 years ago

Due date changed from 04/30/2021 to 05/31/2021

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#13

Updated by Peter Amstutz over 3 years ago

Might need to use "singularity build --fix-perms"

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#14

Updated by Peter Amstutz over 3 years ago

singularity build my_image.sif docker-archive://my_image.tgz

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#15

Updated by Ward Vandewege over 3 years ago

Blocked by Feature #17726: [singularity] add documentation added

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#16

Updated by Tom Clegg over 3 years ago

Related to Feature #17813: Cache docker-to-singularity image conversions added

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#17

Updated by Peter Amstutz over 3 years ago

Due date changed from 05/31/2021 to 07/31/2021

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#18

Updated by Tom Clegg over 3 years ago

Related to Bug #17816: singularity not setting working directory added

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#19

Updated by Peter Amstutz over 3 years ago

Due date changed from 07/31/2021 to 08/31/2021

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#20

Updated by Peter Amstutz over 3 years ago

Related to Idea #17755: Test singularity support on a cloud cluster by running some real workflows added

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#21

Updated by Peter Amstutz over 3 years ago

Related to Idea #17857: Run WGS variant calling workflow on 9tee4 with LSF and Singularity enabled added

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#22

Updated by Peter Amstutz over 3 years ago

Related to Feature #17988: Enforce memory limits using Singularity + cloud added

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#23

Updated by Peter Amstutz over 3 years ago

Due date changed from 08/31/2021 to 09/30/2021

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#24

Updated by Ward Vandewege over 3 years ago

Blocked by Feature #18098: [crunch-run] should print out the runtime engine used added

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#25

Updated by Peter Amstutz about 3 years ago

Status changed from In Progress to Resolved

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