Story #16305

Singularity support

Added by Peter Amstutz over 1 year ago. Updated 28 days ago.

Status:
In Progress
Priority:
Normal
Assigned To:
-
Target version:
-
Start date:
01/01/2021
Due date:
09/30/2021
% Done:

0%

Estimated time:
Story points:
-
Release:
Release relationship:
Auto

Related issues

Related to Arvados - Story #17241: Scoping/grooming Singularity support workResolved

Related to Arvados - Story #17296: Singularity proof of conceptResolved05/27/2021

Related to Arvados - Feature #17813: Cache docker-to-singularity image conversionsResolved07/23/2021

Related to Arvados - Bug #17816: singularity not setting working directoryResolved07/14/2021

Related to Arvados - Story #17755: Test singularity support on a cloud cluster by running some real workflowsResolved09/03/2021

Related to Arvados - Story #17857: Run WGS variant calling workflow on 9tee4 with LSF and Singularity enabledResolved08/27/2021

Related to Arvados - Feature #17988: Enforce memory limits using Singularity + cloudNew

Blocked by Arvados - Feature #17726: [singularity] add documentationResolved08/05/2021

Blocked by Arvados - Feature #18098: [crunch-run] should print out the runtime engine usedNew

History

#1 Updated by Peter Amstutz over 1 year ago

  • Start date set to 01/01/2021

#2 Updated by Peter Amstutz over 1 year ago

  • Start date changed from 01/01/2021 to 03/01/2021
  • Due date set to 05/31/2021

#3 Updated by Peter Amstutz over 1 year ago

  • Start date changed from 03/01/2021 to 04/01/2021

#4 Updated by Peter Amstutz about 1 year ago

  • Start date changed from 04/01/2021 to 01/01/2021
  • Due date changed from 05/31/2021 to 03/31/2021

#5 Updated by Peter Amstutz about 1 year ago

  • Start date changed from 01/01/2021 to 11/01/2020
  • Due date changed from 03/31/2021 to 01/31/2021

#6 Updated by Peter Amstutz 11 months ago

  • Start date changed from 11/01/2020 to 12/01/2020
  • Due date changed from 01/31/2021 to 02/28/2021

#7 Updated by Peter Amstutz 10 months ago

  • Start date changed from 12/01/2020 to 01/01/2021
  • Due date changed from 02/28/2021 to 03/31/2021

#8 Updated by Peter Amstutz 8 months ago

  • Status changed from New to In Progress

#9 Updated by Peter Amstutz 8 months ago

  • Related to Story #17241: Scoping/grooming Singularity support work added

#10 Updated by Peter Amstutz 7 months ago

  • Due date changed from 03/31/2021 to 04/30/2021

#11 Updated by Peter Amstutz 6 months ago

  • Related to Story #17296: Singularity proof of concept added

#12 Updated by Peter Amstutz 6 months ago

  • Due date changed from 04/30/2021 to 05/31/2021

#13 Updated by Peter Amstutz 4 months ago

Might need to use "singularity build --fix-perms"

#14 Updated by Peter Amstutz 4 months ago

singularity build my_image.sif docker-archive://my_image.tgz

#15 Updated by Ward Vandewege 4 months ago

#16 Updated by Tom Clegg 3 months ago

  • Related to Feature #17813: Cache docker-to-singularity image conversions added

#17 Updated by Peter Amstutz 3 months ago

  • Due date changed from 05/31/2021 to 07/31/2021

#18 Updated by Tom Clegg 3 months ago

  • Related to Bug #17816: singularity not setting working directory added

#19 Updated by Peter Amstutz 3 months ago

  • Due date changed from 07/31/2021 to 08/31/2021

#20 Updated by Peter Amstutz about 2 months ago

  • Related to Story #17755: Test singularity support on a cloud cluster by running some real workflows added

#21 Updated by Peter Amstutz about 2 months ago

  • Related to Story #17857: Run WGS variant calling workflow on 9tee4 with LSF and Singularity enabled added

#22 Updated by Peter Amstutz about 1 month ago

  • Related to Feature #17988: Enforce memory limits using Singularity + cloud added

#23 Updated by Peter Amstutz 28 days ago

  • Due date changed from 08/31/2021 to 09/30/2021

#24 Updated by Ward Vandewege 17 days ago

  • Blocked by Feature #18098: [crunch-run] should print out the runtime engine used added

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