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Story #16305

closed

Singularity support

Added by Peter Amstutz about 3 years ago. Updated over 1 year ago.

Status:
Resolved
Priority:
Normal
Assigned To:
-
Target version:
-
Start date:
01/01/2021
Due date:
09/30/2021
% Done:

0%

Estimated time:
Story points:
-
Release:
Epics
Release relationship:
Auto

Related issues

Related to Arvados - Story #17241: Scoping/grooming Singularity support workResolvedWard Vandewege

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Related to Arvados - Story #17296: Singularity proof of conceptResolvedTom Clegg05/27/2021

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Related to Arvados - Feature #17813: Cache docker-to-singularity image conversionsResolvedPeter Amstutz07/23/2021

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Related to Arvados - Bug #17816: singularity not setting working directoryResolvedPeter Amstutz07/14/2021

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Related to Arvados - Story #17755: Test singularity support on a cloud cluster by running some real workflowsResolvedWard Vandewege09/03/2021

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Related to Arvados - Story #17857: Run WGS variant calling workflow on 9tee4 with LSF and Singularity enabledResolvedWard Vandewege08/27/2021

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Related to Arvados - Feature #17988: Enforce memory limits using Singularity + cloudNew

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Blocked by Arvados - Feature #17726: [singularity] add documentationResolvedTom Clegg08/05/2021

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Blocked by Arvados - Feature #18098: [crunch-run] should print out the runtime engine usedResolvedTom Clegg09/22/2021

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 #1

Updated by Peter Amstutz about 3 years ago

  • Start date set to 01/01/2021
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 #2

Updated by Peter Amstutz about 3 years ago

  • Start date changed from 01/01/2021 to 03/01/2021
  • Due date set to 05/31/2021
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 #3

Updated by Peter Amstutz about 3 years ago

  • Start date changed from 03/01/2021 to 04/01/2021
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 #4

Updated by Peter Amstutz over 2 years ago

  • Start date changed from 04/01/2021 to 01/01/2021
  • Due date changed from 05/31/2021 to 03/31/2021
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 #5

Updated by Peter Amstutz over 2 years ago

  • Start date changed from 01/01/2021 to 11/01/2020
  • Due date changed from 03/31/2021 to 01/31/2021
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 #6

Updated by Peter Amstutz over 2 years ago

  • Start date changed from 11/01/2020 to 12/01/2020
  • Due date changed from 01/31/2021 to 02/28/2021
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 #7

Updated by Peter Amstutz over 2 years ago

  • Start date changed from 12/01/2020 to 01/01/2021
  • Due date changed from 02/28/2021 to 03/31/2021
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 #8

Updated by Peter Amstutz about 2 years ago

  • Status changed from New to In Progress
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 #9

Updated by Peter Amstutz about 2 years ago

  • Related to Story #17241: Scoping/grooming Singularity support work added
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 #10

Updated by Peter Amstutz about 2 years ago

  • Due date changed from 03/31/2021 to 04/30/2021
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 #11

Updated by Peter Amstutz about 2 years ago

  • Related to Story #17296: Singularity proof of concept added
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 #12

Updated by Peter Amstutz almost 2 years ago

  • Due date changed from 04/30/2021 to 05/31/2021
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 #13

Updated by Peter Amstutz almost 2 years ago

Might need to use "singularity build --fix-perms"

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 #14

Updated by Peter Amstutz almost 2 years ago

singularity build my_image.sif docker-archive://my_image.tgz

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 #15

Updated by Ward Vandewege almost 2 years ago

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 #16

Updated by Tom Clegg almost 2 years ago

  • Related to Feature #17813: Cache docker-to-singularity image conversions added
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 #17

Updated by Peter Amstutz almost 2 years ago

  • Due date changed from 05/31/2021 to 07/31/2021
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 #18

Updated by Tom Clegg almost 2 years ago

  • Related to Bug #17816: singularity not setting working directory added
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 #19

Updated by Peter Amstutz almost 2 years ago

  • Due date changed from 07/31/2021 to 08/31/2021
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 #20

Updated by Peter Amstutz over 1 year ago

  • Related to Story #17755: Test singularity support on a cloud cluster by running some real workflows added
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 #21

Updated by Peter Amstutz over 1 year ago

  • Related to Story #17857: Run WGS variant calling workflow on 9tee4 with LSF and Singularity enabled added
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 #22

Updated by Peter Amstutz over 1 year ago

  • Related to Feature #17988: Enforce memory limits using Singularity + cloud added
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 #23

Updated by Peter Amstutz over 1 year ago

  • Due date changed from 08/31/2021 to 09/30/2021
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 #24

Updated by Ward Vandewege over 1 year ago

  • Blocked by Feature #18098: [crunch-run] should print out the runtime engine used added
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 #25

Updated by Peter Amstutz over 1 year ago

  • Status changed from In Progress to Resolved
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