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Bug #16339
closedAmbarish_Kumar_SOP-GATK-SAR-CoV-2.cwl errors
Story points:
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Release:
Release relationship:
Auto
Description
$ arvados-cwl-runner Ambarish_Kumar_SOP-GATK-SAR-CoV-2.cwl Ambarish_Kumar_SOP-GATK-SAR-CoV-2_inputs.yml INFO /home/michael/src/2020-covid-19-bh/env3.7/bin/arvados-cwl-runner 2.0.1, arvados-python-client 2.0.1, cwltool 1.0.20190831161204 INFO Resolved 'Ambarish_Kumar_SOP-GATK-SAR-CoV-2.cwl' to 'file:///home/michael/src/2020-covid-19-bh/Ambarish_Kumar_SOP/Ambarish_Kumar_SOP-GATK-SAR-CoV-2.cwl' WARNING Workflow checker warning: Ambarish_Kumar_SOP-GATK-SAR-CoV-2.cwl:57:12: Source 'sequences_with_dictionary' of type "File" may be incompatible Ambarish_Kumar_SOP-GATK-SAR-CoV-2.cwl:88:7: with sink 'reference' of type "File" Ambarish_Kumar_SOP-GATK-SAR-CoV-2.cwl:57:12: Source 'sequences_with_dictionary' of type "File" may be incompatible Ambarish_Kumar_SOP-GATK-SAR-CoV-2.cwl:105:7: with sink 'reference' of type "File" INFO Upload local files: "ebola_mut_reads1.fq" "ebola_mut_reads2.fq" "ebola_ref.fasta" INFO Using collection bcb759e2e40dcd91eedcded863913a7c+219 (lugli-4zz18-kk9c9rhbzq5wf4s) INFO Downloading http://edamontology.org/EDAM_1.18.owl (2752312 bytes) ERROR Unhandled error, try again with --debug for more information: <HttpError 422 when requesting https://lugli.arvadosapi.com/arvados/v1/collections?ensure_unique_name=true&alt=json returned "request failed: http://localhost:8004/arvados/v1/collections: 422 Unprocessable Entity: Name cannot contain a '/' character (req-8gddg6hazk0npc8pvpt2)">
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