Support #16872

Convert WDL workflows to CWL, with notes

Added by Peter Amstutz over 1 year ago. Updated over 1 year ago.

Status:
New
Priority:
Normal
Assigned To:
Category:
CWL
Target version:
-
Start date:
Due date:
% Done:

0%

Estimated time:
Story points:
-

Description

Pick something from

https://github.com/gatk-workflows

like

https://github.com/gatk-workflows/gatk4-genome-processing-pipeline
https://github.com/gatk-workflows/gatk4-germline-snps-indels

  • Use the existing Docker images / Dockerfile, don't write your own
  • CWL version should run and do something reasonable, but don't get stuck trying to exactly reproduce results of original workflow.

Related issues

Related to Arvados Epics - Story #16011: CWL support, docs, training, websiteIn Progress07/01/202006/30/2022

History

#1 Updated by Peter Amstutz over 1 year ago

  • Related to Story #16011: CWL support, docs, training, website added

#2 Updated by Peter Amstutz over 1 year ago

  • Subject changed from Convert example workflows from WDL, with notes to Convert WDL workflows to CWL, with notes

#3 Updated by Peter Amstutz over 1 year ago

  • Description updated (diff)

#4 Updated by Jiayong Li over 1 year ago

  • Description updated (diff)

#5 Updated by Jiayong Li over 1 year ago

  • Description updated (diff)

#6 Updated by Peter Amstutz over 1 year ago

  • Description updated (diff)

#7 Updated by Jiayong Li over 1 year ago

  • Assigned To set to Jiayong Li

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