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Support #16872

closed

Convert WDL workflows to CWL, with notes

Added by Peter Amstutz over 3 years ago. Updated almost 2 years ago.

Status:
Closed
Priority:
Normal
Assigned To:
Jiayong Li
Category:
CWL
Target version:
-
Due date:
Story points:
-

Description

Pick something from

https://github.com/gatk-workflows

like

https://github.com/gatk-workflows/gatk4-genome-processing-pipeline
https://github.com/gatk-workflows/gatk4-germline-snps-indels

  • Use the existing Docker images / Dockerfile, don't write your own
  • CWL version should run and do something reasonable, but don't get stuck trying to exactly reproduce results of original workflow.

Related issues

Related to Arvados Epics - Idea #16011: CWL support, docs, training, websiteResolved07/01/202007/31/2022Actions
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 #1

Updated by Peter Amstutz over 3 years ago

  • Related to Idea #16011: CWL support, docs, training, website added
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 #2

Updated by Peter Amstutz over 3 years ago

  • Subject changed from Convert example workflows from WDL, with notes to Convert WDL workflows to CWL, with notes
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 #3

Updated by Peter Amstutz over 3 years ago

  • Description updated (diff)
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 #4

Updated by Jiayong Li over 3 years ago

  • Description updated (diff)
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 #5

Updated by Jiayong Li over 3 years ago

  • Description updated (diff)
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 #6

Updated by Peter Amstutz over 3 years ago

  • Description updated (diff)
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 #7

Updated by Jiayong Li over 3 years ago

  • Assigned To set to Jiayong Li
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 #8

Updated by Peter Amstutz almost 2 years ago

  • Status changed from New to Closed
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