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Support #16872
closed
Convert WDL workflows to CWL, with notes
Status:
Closed
Priority:
Normal
Assigned To:
Jiayong Li
Category:
CWL
Target version:
-
Due date:
Story points:
-
Description
Pick something from
https://github.com/gatk-workflows
like
https://github.com/gatk-workflows/gatk4-genome-processing-pipeline
https://github.com/gatk-workflows/gatk4-germline-snps-indels
- Use the existing Docker images / Dockerfile, don't write your own
- CWL version should run and do something reasonable, but don't get stuck trying to exactly reproduce results of original workflow.
Related issues
Updated by 
Updated by Jiayong Li
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