Bug #17005

CWL v1.2 Conformance test 83 failed twice on the new Arvados Playground

Added by Michael Crusoe about 1 year ago.

Status:
New
Priority:
Normal
Assigned To:
-
Category:
-
Target version:
-
Start date:
Due date:
% Done:

0%

Estimated time:
Story points:
-

Description

Test [83/337] wf_scatter_oneparam_valueFrom: Test valueFrom eval on scattered input parameter
Test 83 failed: /home/michael/common-workflow-language/arvenv3.6/bin/arvados-cwl-runner --compute-checksum --project-uuid=pirca-j7d0g-fkh3kn4kq1vvqtm --outdir=/tmp/tmp6xk5ho35 --quiet tests/scatter-valuefrom-wf6.cwl tests/scatter-valuefrom-job3.json
Test valueFrom eval on scattered input parameter
Returned non-zero
ERROR [container scatter-valuefrom-wf6.cwl] (pirca-dz642-uwrxwr19y6xcrqw) error log:

2020-10-14T16:11:35.897539571Z crunch-run crunch-run 2.1.0 (go1.13.4) started
2020-10-14T16:11:35.897567852Z crunch-run Executing container 'pirca-dz642-uwrxwr19y6xcrqw'
2020-10-14T16:11:35.897578659Z crunch-run Executing on host 'ip-10-254-254-121'
2020-10-14T16:11:36.005817744Z crunch-run Fetching Docker image from collection 'af41a455939e61edb3a11aafce28be9a+261'
2020-10-14T16:11:36.021792711Z crunch-run Using Docker image id 'sha256:39b6c29c7a40c32a9a4ff0b4f77d2cd3dea27b8d27f044c1561bd1763d91c5e8'
2020-10-14T16:11:36.022646887Z crunch-run Loading Docker image from keep
2020-10-14T16:11:48.783548379Z crunch-run Docker response: {"stream":"Loaded image ID: sha256:39b6c29c7a40c32a9a4ff0b4f77d2cd3dea27b8d27f044c1561bd1763d91c5e8\n"}
2020-10-14T16:11:48.783943080Z crunch-run Running [arv-mount --foreground --allow-other --read-write --crunchstat-interval=10 --file-cache 268435456 --mount-tmp tmp0 --mount-by-pdh by_id /tmp/crunch-run.pirca-dz642-uwrxwr19y6xcrqw.778018510/keep224304085]
2020-10-14T16:11:50.406993608Z crunch-run Creating Docker container
2020-10-14T16:11:51.108306690Z crunch-run Attaching container streams
2020-10-14T16:11:51.233805082Z crunch-run Starting Docker container id '0830f4de61a1c1e4184f0ff78b5ad3a07dca85f9d79636914fc95295c1ddd020'
2020-10-14T16:11:52.011094758Z crunch-run Waiting for container to finish
2020-10-14T16:11:53.854639266Z stderr INFO /usr/bin/arvados-cwl-runner 2.1.0, arvados-python-client 2.1.0, cwltool 3.0.20200807132242
2020-10-14T16:11:53.866567328Z stderr INFO Resolved '/var/lib/cwl/workflow.json#main' to 'file:///var/lib/cwl/workflow.json#main'
2020-10-14T16:11:56.118985095Z stderr INFO Using cluster pirca (https://pirca.arvadosapi.com/)
2020-10-14T16:11:56.306442111Z stderr INFO Using collection cache size 256 MiB
2020-10-14T16:11:56.330548611Z stderr INFO Running inside container pirca-dz642-uwrxwr19y6xcrqw
2020-10-14T16:11:56.346885341Z stderr INFO [workflow workflow.json#main] start
2020-10-14T16:11:56.347331871Z stderr INFO [workflow workflow.json#main] starting step step1
2020-10-14T16:11:56.348069440Z stderr INFO [step step1] start
2020-10-14T16:11:56.444169560Z stderr INFO [container step1] pirca-xvhdp-pj4omuag6507i69 state is Committed
2020-10-14T16:11:56.444169560Z stderr INFO [step step1] start
2020-10-14T16:11:56.541120952Z stderr INFO [container step1_2] pirca-xvhdp-yu3w69u03ijtnm9 state is Committed
2020-10-14T16:12:04.141247545Z stderr ERROR Caught signal 15, exiting.
2020-10-14T16:12:04.198345475Z stderr ERROR Interrupted, workflow will be cancelled
2020-10-14T16:12:04.262219931Z stderr ERROR Workflow error, try again with --debug for more information:
2020-10-14T16:12:04.262219931Z stderr Workflow did not return a result.
2020-10-14T16:12:04.685214802Z crunch-run Container exited with code: 1
2020-10-14T16:12:04.741748338Z crunch-run Complete
ERROR Overall process status is permanentFail
WARNING Final process status is permanentFail

The third time it succeeded.

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