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Bug #17708

closed

[crunch-run] should be more tolerant of unsupported file types in the output directory

Added by Ward Vandewege over 1 year ago. Updated over 1 year ago.

Status:
Resolved
Priority:
Normal
Assigned To:
Category:
-
Target version:
Start date:
05/21/2021
Due date:
% Done:

100%

Estimated time:
(Total: 0.00 h)
Story points:
-
Release relationship:
Auto

Description

Seeing a fatal error in a job, leading to no outputs being saved at all:

error in CaptureOutput: error scanning files to copy to output: Unsupported file type (mode 200000600) in output dir: "/var/spool/cwl/REDACTEDtmp/tmp.fifo.read1" 

That doesn't quite seem reasonable; if there are leftover fifos or named pipes, surely that should not make crunch-run error out. Printing a warning and just skipping the files of unsupported type in the copy job would be a better way to deal with this situation.


Subtasks 1 (0 open1 closed)

Task #17709: review 17708-crunch-run-unsupported-file-typesResolvedWard Vandewege05/21/2021

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