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Bug #17846

closed

[tutorial] inconsistencies/roadbumps

Added by Ward Vandewege almost 3 years ago. Updated 8 months ago.

Status:
Duplicate
Priority:
Normal
Assigned To:
Category:
-
Story points:
-
Release relationship:
Auto

Description

This is about https://doc.arvados.org/v2.2/user/tutorials/wgs-tutorial.html:

  • the tutorial says to search for the “PGP UK FASTQs” collection, but that collection does not exist, there is "PGP UK FASTQs (one genome)" and "PGP UK FASTQs (ten genomes)". Which of these 2 collections should the tutorial to refer to?
  • the tutorial says to search for the "WGS Processing Workflow” registered workflow. There is a project with that name at https://workbench.pirca.arvadosapi.com/projects/pirca-j7d0g-chdv0xwrzxngtfn, which contains the workflow "WGS processing workflow scattered over samples". It would be better to point directly at that workflow from the tutorial docs (i.e. change the search term), if that is indeed the intended one. We don't explain that one needs to navigate from the project to the registered workflow in it, and in any case, that is an unnecessary step.
  • The tutorial says "The input Directory of paired FASTQ files will need to be set. " but that is not true, it defaults to "keep:a146a06222f9a66b7d141e078fc67660+376237". The registered workflow should be updated to make that input field empty.
  • Customer feedback - "Hi all - I'm going through the users guide and discovered a discrepency in steps. Specifically https://doc.arvados.org/v2.2/user/tutorials/wgs-tutorial.html, from step 3a setting up a new project to step 3b working with collections. There is no transition.
    EDIT: Nevermind, its there, just wasn't clear as II was reading it."

Subtasks 1 (0 open1 closed)

Task #17875: ReviewClosedBrett Smith09/13/2023Actions

Related issues

Related to Arvados - Bug #17845: [tutorial] reuse is not workingResolvedAlex ColemanActions
Related to Arvados Epics - Idea #17001: Arvados uses WB2 by defaultResolvedActions
Related to Arvados - Support #20497: Update WGS tutorial to use Workbench 2ResolvedAlex Coleman08/16/2023Actions
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