Bug #18285

Incorrect warning "Unknown hint http://arvados.org/cwl#RuntimeConstraints"

Added by Peter Amstutz about 1 month ago. Updated 10 days ago.

Status:
Resolved
Priority:
Normal
Assigned To:
Category:
CWL
Target version:
Start date:
Due date:
% Done:

0%

Estimated time:
Story points:
-
Release relationship:
Auto

Description

peteramstutz@shell:~/arvados-tutorial/WGS-processing$ arvados-cwl-runner --project-uuid=pirca-j7d0g-n2fc6tjau3qa25z --no-wait cwl/w
gs-processing-wf.cwl yml/wgs-processing-wf-chr19.yml
INFO /usr/bin/arvados-cwl-runner 2.3.0rc3, arvados-python-client 2.3.0rc3, cwltool 3.1.20211020155521
INFO Resolved 'cwl/wgs-processing-wf.cwl' to 'file:///data/home/peteramstutz/arvados-tutorial/WGS-processing/cwl/wgs-processing-wf.
cwl'
INFO cwl/helper/bwamem-samtools-view.cwl:11:3: Unknown hint http://arvados.org/cwl#RuntimeConstraints
INFO cwl/helper/gather-array-vcf.cwl:15:3: Unknown hint http://arvados.org/cwl#RuntimeConstraints
INFO cwl/helper/gatk-applyBSQR-with-interval.cwl:10:3: Unknown hint http://arvados.org/cwl#RuntimeConstraints
INFO cwl/helper/gatk-baserecalibrator-with-interval.cwl:10:3: Unknown hint http://arvados.org/cwl#RuntimeConstraints
INFO cwl/helper/gatk-haplotypecaller-with-interval.cwl:10:3: Unknown hint http://arvados.org/cwl#RuntimeConstraints
INFO cwl/helper/gatk-selectvariants.cwl:10:3: Unknown hint http://arvados.org/cwl#RuntimeConstraints
INFO cwl/helper/gatk-splitintervals.cwl:10:3: Unknown hint http://arvados.org/cwl#RuntimeConstraints
INFO cwl/helper/mark-duplicates.cwl:13:3: Unknown hint http://arvados.org/cwl#RuntimeConstraints
INFO cwl/helper/samtools-index.cwl:13:3: Unknown hint http://arvados.org/cwl#RuntimeConstraints
...

These warnings should not be printed.

History

#1 Updated by Peter Amstutz about 1 month ago

  • Status changed from New to In Progress

#2 Updated by Peter Amstutz about 1 month ago

  • Category set to CWL
  • Description updated (diff)
  • Subject changed from aoeu to Incorrect warning "Unknown hint http://arvados.org/cwl#RuntimeConstraints"

#3 Updated by Peter Amstutz about 1 month ago

  • Release set to 45

#4 Updated by Peter Amstutz about 1 month ago

  • Target version changed from 2021-10-27 sprint to 2021-11-10 sprint

#5 Updated by Peter Amstutz about 1 month ago

  • Target version changed from 2021-11-10 sprint to 2021-11-24 sprint

#6 Updated by Peter Amstutz about 1 month ago

  • Status changed from In Progress to New

#7 Updated by Peter Amstutz 18 days ago

  • Target version changed from 2021-11-24 sprint to 2021-12-08 sprint

#8 Updated by Peter Amstutz 11 days ago

  • Target version changed from 2021-12-08 sprint to 2021-11-24 sprint

#9 Updated by Peter Amstutz 11 days ago

  • Assigned To set to Peter Amstutz

#11 Updated by Peter Amstutz 10 days ago

  • Status changed from New to In Progress

#12 Updated by Peter Amstutz 10 days ago

  • Status changed from In Progress to Resolved

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