https://dev.arvados.org/https://dev.arvados.org/favicon.ico?15576888422022-04-12T21:17:18ZArvadosArvados - Bug #18994: Changing basename does not change filename it materializes ashttps://dev.arvados.org/issues/18994?journal_id=1027482022-04-12T21:17:18ZPeter Amstutzpeter.amstutz@curii.com
<ul><li><strong>Status</strong> changed from <i>New</i> to <i>In Progress</i></li></ul> Arvados - Bug #18994: Changing basename does not change filename it materializes ashttps://dev.arvados.org/issues/18994?journal_id=1027492022-04-12T21:17:25ZPeter Amstutzpeter.amstutz@curii.com
<ul><li><strong>Assigned To</strong> set to <i>Peter Amstutz</i></li><li><strong>Status</strong> changed from <i>In Progress</i> to <i>New</i></li><li><strong>Category</strong> set to <i>CWL</i></li></ul> Arvados - Bug #18994: Changing basename does not change filename it materializes ashttps://dev.arvados.org/issues/18994?journal_id=1028612022-04-14T18:31:52ZPeter Amstutzpeter.amstutz@curii.com
<ul></ul><p>18994-cwl-basename @ <a class="changeset" title="18994: Remove debug print Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>" href="https://dev.arvados.org/projects/arvados/repository/arvados/revisions/bf95fa077c79c6bd4ac548ec534b618e97e3f00b">bf95fa077c79c6bd4ac548ec534b618e97e3f00b</a></p>
<ul>
<li>Added integration test for this case</li>
<li>Now includes check for "basename" in check whether input files need to be re-staged into a new intermediate collection</li>
<li>The actual re-staging already uses basename correctly</li>
</ul>
<p><a class="external" href="https://ci.arvados.org/view/Developer/job/developer-run-tests/3056/"<a href="https://ci.arvados.org/view/Developer/job/developer-run-tests/3056/">developer-run-tests: #3056 <img src="https://ci.arvados.org/buildStatus/icon?job=developer-run-tests&build=3056" alt="" /></a></a></p> Arvados - Bug #18994: Changing basename does not change filename it materializes ashttps://dev.arvados.org/issues/18994?journal_id=1028972022-04-15T19:43:28ZPeter Amstutzpeter.amstutz@curii.com
<ul></ul><p>18994-cwl-basename @ <a class="changeset" title="18994: Fix needs_new_collection errors found by tests Arvados-DCO-1.1-Signed-off-by: Peter Amstu..." href="https://dev.arvados.org/projects/arvados/repository/arvados/revisions/5d039c344850dfc5fedd03c1050fa51eec404d72">5d039c344850dfc5fedd03c1050fa51eec404d72</a></p>
<ul>
<li>Fix tests </li>
<li>Better handling of optional dependencies </li>
<li>Bonus fix for <a class="issue tracker-1 status-3 priority-4 priority-default closed" title="Bug: CWL colon_in_output_path conformance test failing (Resolved)" href="https://dev.arvados.org/issues/18614">#18614</a></li>
<li>passed CWL conformance tests on arvbox</li>
<li>passed Arvados CWL integration tests on arvbox</li>
</ul>
<p><a class="external" href="https://ci.arvados.org/view/Developer/job/developer-run-tests/3066/"<a href="https://ci.arvados.org/view/Developer/job/developer-run-tests/3066/">developer-run-tests: #3066 <img src="https://ci.arvados.org/buildStatus/icon?job=developer-run-tests&build=3066" alt="" /></a></a></p>
<p>re-run: <a class="external" href="https://ci.arvados.org/job/developer-run-tests-apps-workbench-integration/3275/"<a href="https://ci.arvados.org/job/developer-run-tests-apps-workbench-integration/3275/">developer-run-tests-apps-workbench-integration: #3275 <img src="https://ci.arvados.org/buildStatus/icon?job=developer-run-tests-apps-workbench-integration&build=3275" alt="" /></a></a></p>
<p>re-run: <a class="external" href="https://ci.arvados.org/job/developer-run-tests-apps-workbench-integration/3276/"<a href="https://ci.arvados.org/job/developer-run-tests-apps-workbench-integration/3276/">developer-run-tests-apps-workbench-integration: #3276 <img src="https://ci.arvados.org/buildStatus/icon?job=developer-run-tests-apps-workbench-integration&build=3276" alt="" /></a></a></p> Arvados - Bug #18994: Changing basename does not change filename it materializes ashttps://dev.arvados.org/issues/18994?journal_id=1029002022-04-15T20:13:01ZPeter Amstutzpeter.amstutz@curii.com
<ul><li><strong>Status</strong> changed from <i>New</i> to <i>In Progress</i></li></ul> Arvados - Bug #18994: Changing basename does not change filename it materializes ashttps://dev.arvados.org/issues/18994?journal_id=1029092022-04-18T14:38:35ZLucas Di Pentimalucas.dipentima@curii.com
<ul></ul><p>Just one observation:</p>
<ul>
<li>In <code>runner.py</code> there're a number of commented out code lines left.</li>
</ul>
<p>The rest LGTM</p> Arvados - Bug #18994: Changing basename does not change filename it materializes ashttps://dev.arvados.org/issues/18994?journal_id=1029152022-04-19T14:14:03ZPeter Amstutzpeter.amstutz@curii.com
<ul><li><strong>Release</strong> set to <i>51</i></li></ul> Arvados - Bug #18994: Changing basename does not change filename it materializes ashttps://dev.arvados.org/issues/18994?journal_id=1029202022-04-19T14:15:33ZPeter Amstutzpeter.amstutz@curii.com
<ul><li><strong>Related to</strong> <i><a class="issue tracker-1 status-3 priority-4 priority-default closed" href="/issues/18614">Bug #18614</a>: CWL colon_in_output_path conformance test failing</i> added</li></ul> Arvados - Bug #18994: Changing basename does not change filename it materializes ashttps://dev.arvados.org/issues/18994?journal_id=1029232022-04-19T14:24:56ZPeter Amstutzpeter.amstutz@curii.com
<ul><li><strong>Status</strong> changed from <i>In Progress</i> to <i>Resolved</i></li></ul>