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Bug #20462

closed

Uploading a new workflow is failing

Added by Peter Amstutz about 1 year ago. Updated 11 months ago.

Status:
Resolved
Priority:
Normal
Assigned To:
Category:
CWL
Story points:
-
Release relationship:
Auto

Description

DEBUG EXIT mapper 1682618282.1297848 0.000244140625

DEBUG ENTER collectloc 1682618282.1298783

DEBUG EXIT collectloc 1682618282.132989 0.003110647201538086

DEBUG EXIT upload_dependencies wes-postalignment-tumor-only.cwl 1682618282.1488423 0.16721153259277344

DEBUG EXIT upload_workflow_deps 1682618282.1490312 15.242694616317749

ERROR Unhandled error:

string index out of range

Traceback (most recent call last):

File "/scratch/WES-Launcher-new/env/lib64/python3.7/site-packages/cwltool/main.py", line 1361, in main
tool, initialized_job_order_object, runtimeContext, logger=_logger
File "/scratch/WES-Launcher-new/env/lib64/python3.7/site-packages/arvados_cwl/executor.py", line 713, in arv_executor
jobmapper=jobmapper)
File "/scratch/WES-Launcher-new/env/lib64/python3.7/site-packages/arvados_cwl/arvworkflow.py", line 293, in upload_workflow
if f[n] != firstfile[n]:

IndexError: string index out of range


Subtasks 1 (0 open1 closed)

Task #20466: Review 20462-workflow-prefixResolvedPeter Amstutz05/01/2023Actions
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