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Bug #21186

open

Expression Tool fails unexpectantly and then intermediate data not avaialble in wb2

Added by Sarah Zaranek 11 months ago. Updated 12 days ago.

Status:
New
Priority:
Normal
Assigned To:
-
Category:
-
Story points:
-

Description

I am running a workflow that includes a scatter. After the scatter I run the follow expressionTool to get the files and place them in a single collection to follow by a step to filter and collection the step outputs in a single file. The expression tool worked for 10 files and fails for 200ish files.

Failed job: https://workbench2.2xpu4.arvadosapi.com/processes/2xpu4-xvhdp-rd5v1ni214327up (with a 403 error)

The intermediate steps (perhaps because I was moving the files) now do not have the intermediate data - and then I click on those jobs I get a white message that the page cannot be found (which it can cause I am on it, I think this is the bug that if it can't find something on the page, it says the page can't be found). Then if I go to the output collection listed on the page (the process page lists collection but no outputs) it just spins and spins and spins trying to load the data which it has a size on but can't load the file listing of.

Subprocess: https://workbench2.2xpu4.arvadosapi.com/processes/2xpu4-xvhdp-d9vo9kqc2kyje3c
Collection: https://workbench2.2xpu4.arvadosapi.com/collections/2xpu4-4zz18-sce3cloyd5yw7i3


Files

stderr(1).txt (65.4 KB) stderr(1).txt Sarah Zaranek, 11/09/2023 04:24 PM
Actions #1

Updated by Sarah Zaranek 11 months ago

Adding log...

Actions #2

Updated by Tom Clegg 11 months ago

railsapi log for the request that returned 403:

[req-6em6yk25mdrv5ydz41f3] Invalid signature on locator a603ab0455cea3c871fd8ab1464a72d7+2187864+A8c0c60bf37edeba28280b3c6ae46d3515e993c06@654bfaae

Actions #3

Updated by Peter Amstutz 7 months ago

  • Target version set to Development 2024-03-27 sprint
Actions #4

Updated by Peter Amstutz 7 months ago

  • Target version changed from Development 2024-03-27 sprint to Development 2024-04-10 sprint
Actions #5

Updated by Peter Amstutz 6 months ago

  • Target version changed from Development 2024-04-10 sprint to Development 2024-04-24 sprint
Actions #6

Updated by Peter Amstutz 6 months ago

  • Target version changed from Development 2024-04-24 sprint to Development 2024-05-08 sprint
Actions #7

Updated by Peter Amstutz 6 months ago

  • Target version changed from Development 2024-05-08 sprint to Development 2024-06-05 sprint
Actions #8

Updated by Peter Amstutz 5 months ago

  • Target version changed from Development 2024-06-05 sprint to 439
Actions #9

Updated by Peter Amstutz 4 months ago

  • Target version changed from 439 to Development 2024-06-19 sprint
Actions #10

Updated by Peter Amstutz 4 months ago

  • Target version changed from Development 2024-06-19 sprint to Development 2024-07-03 sprint
Actions #11

Updated by Peter Amstutz 4 months ago

  • Target version changed from Development 2024-07-03 sprint to Development 2024-07-24 sprint
Actions #12

Updated by Peter Amstutz 3 months ago

  • Target version changed from Development 2024-07-24 sprint to Development 2024-08-28 sprint
Actions #13

Updated by Peter Amstutz 2 months ago

  • Target version changed from Development 2024-08-28 sprint to Development 2024-09-11 sprint
Actions #14

Updated by Peter Amstutz about 2 months ago

  • Target version changed from Development 2024-09-11 sprint to Development 2024-09-25 sprint
Actions #15

Updated by Peter Amstutz about 1 month ago

  • Target version changed from Development 2024-09-25 sprint to Development 2024-10-09 sprint
Actions #16

Updated by Peter Amstutz 12 days ago

  • Target version changed from Development 2024-10-09 sprint to Development 2024-10-23 sprint
Actions

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