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Bug #21186

closed

Expression Tool fails unexpectantly and then intermediate data not avaialble in wb2

Added by Sarah Zaranek about 1 year ago. Updated about 2 months ago.

Status:
Closed
Priority:
Normal
Assigned To:
-
Category:
-
Target version:
-
Story points:
-

Description

I am running a workflow that includes a scatter. After the scatter I run the follow expressionTool to get the files and place them in a single collection to follow by a step to filter and collection the step outputs in a single file. The expression tool worked for 10 files and fails for 200ish files.

Failed job: https://workbench2.2xpu4.arvadosapi.com/processes/2xpu4-xvhdp-rd5v1ni214327up (with a 403 error)

The intermediate steps (perhaps because I was moving the files) now do not have the intermediate data - and then I click on those jobs I get a white message that the page cannot be found (which it can cause I am on it, I think this is the bug that if it can't find something on the page, it says the page can't be found). Then if I go to the output collection listed on the page (the process page lists collection but no outputs) it just spins and spins and spins trying to load the data which it has a size on but can't load the file listing of.

Subprocess: https://workbench2.2xpu4.arvadosapi.com/processes/2xpu4-xvhdp-d9vo9kqc2kyje3c
Collection: https://workbench2.2xpu4.arvadosapi.com/collections/2xpu4-4zz18-sce3cloyd5yw7i3


Files

stderr(1).txt (65.4 KB) stderr(1).txt Sarah Zaranek, 11/09/2023 04:24 PM
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