Bug #3370: [Crunch] Job fails with "KeyError: 'CRUNCH_SRC'" - Arvados

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Bug #3370

closed

[Crunch] Job fails with "KeyError: 'CRUNCH_SRC'"

Added by Abram Connelly over 9 years ago. Updated over 9 years ago.

Status:

Resolved

Priority:

Normal

Assigned To:

Peter Amstutz

Category:

Crunch

Target version:

2014-08-06 Sprint

Story points:

0.5

Description

Pipeline instance qr1hi-8i9sb-webyvbe79r0xgcd failed when it was working previously. From the logs (d6e414193c09707939a473b45f614eec+85) I see the following error which I believe to be the culprit:

2014-07-25_20:35:56 qr1hi-8i9sb-webyvbe79r0xgcd 11185 2 stderr KeyError: 'CRUNCH_SRC'

I believe the only thing I changed was adding the following line to the pipeline template:

"runtime_constraints" : { "docker_image" : "arvados/jobs-java-bwa-samtools" }

"runtime_constraints" had been blank previously.

This job was working before I added the "docker_image" value to "runtime_constraints".

Subtasks 1 (0 open — 1 closed)

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Updated by Radhika Chippada over 9 years ago

It appears that qr1hi-8i9sb-webyvbe79r0xgcd is a job uuid. Please provide the pipeline uuid, if you have it, and any other details.

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Updated by Tom Clegg over 9 years ago

Subject changed from Job fails with "KeyError: 'CRUNCH_SRC'" to [Crunch] Job fails with "KeyError: 'CRUNCH_SRC'"
Category set to Crunch
Target version set to 2014-08-06 Sprint