Bug #3370

[Crunch] Job fails with "KeyError: 'CRUNCH_SRC'"

Added by Abram Connelly almost 6 years ago. Updated almost 6 years ago.

Status:
Resolved
Priority:
Normal
Assigned To:
Category:
Crunch
Target version:
Start date:
07/25/2014
Due date:
% Done:

0%

Estimated time:
(Total: 0.00 h)
Story points:
0.5

Description

Pipeline instance qr1hi-8i9sb-webyvbe79r0xgcd failed when it was working previously. From the logs (d6e414193c09707939a473b45f614eec+85) I see the following error which I believe to be the culprit:

2014-07-25_20:35:56 qr1hi-8i9sb-webyvbe79r0xgcd 11185 2 stderr KeyError: 'CRUNCH_SRC'

I believe the only thing I changed was adding the following line to the pipeline template:

"runtime_constraints" : { "docker_image" : "arvados/jobs-java-bwa-samtools" }

"runtime_constraints" had been blank previously.

This job was working before I added the "docker_image" value to "runtime_constraints".


Subtasks

Task #3451: Verify Abram's problem is fixedResolvedPeter Amstutz

Associated revisions

Revision b34070ef (diff)
Added by Peter Amstutz almost 6 years ago

Set $CRUNCH_SRC correctly when running the Docker container. refs #3370

History

#1 Updated by Radhika Chippada almost 6 years ago

It appears that qr1hi-8i9sb-webyvbe79r0xgcd is a job uuid. Please provide the pipeline uuid, if you have it, and any other details.

#2 Updated by Tom Clegg almost 6 years ago

  • Subject changed from Job fails with "KeyError: 'CRUNCH_SRC'" to [Crunch] Job fails with "KeyError: 'CRUNCH_SRC'"
  • Category set to Crunch
  • Target version set to 2014-08-06 Sprint

#3 Updated by Tom Clegg almost 6 years ago

b34070ef included in deploy at 2014-07-30 21:42 (UTC)

#4 Updated by Tom Clegg almost 6 years ago

  • Status changed from New to In Progress

#5 Updated by Peter Amstutz almost 6 years ago

  • Assigned To set to Peter Amstutz

#6 Updated by Peter Amstutz almost 6 years ago

  • Status changed from In Progress to Resolved

#7 Updated by Peter Amstutz almost 6 years ago

  • Story points set to 0.5

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