Idea #3538: Ensure GFF to FASTJ in Lightning git repo - Lightning - Arvados

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Idea #3538

closed

Ensure GFF to FASTJ in Lightning git repo

Added by Sarah Guthrie over 9 years ago. Updated over 7 years ago.

Status:

Closed

Priority:

Normal

Assigned To:

-

Target version:

Future sprints (Lightning)

Story points:

-

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#1

Updated by Abram Connelly over 9 years ago

I believe the intent of this task was to make a pipeline in Arvados that would go from GFF files to FastJ files. The program to do the conversion currently resides at https://github.com/curoverse/lightning/blob/master/experimental/fjtools/gff2fj.go but the full pipeline in Arvados is still pending.

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#2

Updated by Sarah Guthrie over 8 years ago

Subject changed from GFF -> FASTJ to Ensure GFF to FASTJ in Lightning git repo
Parent task deleted (~~#3535~~)

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#3

Updated by Sarah Guthrie over 8 years ago

Tracker changed from Task to Idea

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#4

Updated by Abram Connelly over 7 years ago

Status changed from New to Closed

The pasta package implements this conversion.

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