Story #3538

Ensure GFF to FASTJ in Lightning git repo

Added by Sarah Guthrie almost 5 years ago. Updated almost 3 years ago.

Status:
Closed
Priority:
Normal
Assigned To:
-
Start date:
08/08/2014
Due date:
% Done:

0%

Estimated time:
Story points:
-

History

#1 Updated by Abram Connelly over 4 years ago

I believe the intent of this task was to make a pipeline in Arvados that would go from GFF files to FastJ files. The program to do the conversion currently resides at https://github.com/curoverse/lightning/blob/master/experimental/fjtools/gff2fj.go but the full pipeline in Arvados is still pending.

#2 Updated by Sarah Guthrie over 3 years ago

  • Subject changed from GFF -> FASTJ to Ensure GFF to FASTJ in Lightning git repo
  • Parent task deleted (#3535)

#3 Updated by Sarah Guthrie over 3 years ago

  • Tracker changed from Task to Story

#4 Updated by Abram Connelly almost 3 years ago

  • Status changed from New to Closed

The pasta package implements this conversion.

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