Arvados

See branch 4048-crunch-job-local-script-version

Should verify this is fixed by #3775

Since it's apparently relevant: my pipeline template has the script directory listed in script_version, and an empty repository field, following the example in our documentation.

If I make a local git repository, and try to run with that as repository, it doesn't work either.

Relevant job definition from the template:

        "c1_grep": {
            "script": "grep",
            "script_parameters": {
                "input": {
                    "required": true,
                    "dataclass": "Collection" 
                },
                "pattern": "a" 
            },
            "repository": "/home/brett/4048",
            "script_version": "master" 
        },

Running:

brett@shell.qr1hi:~/4048$ pwd
/home/brett/4048
brett@shell.qr1hi:~/4048$ git rev-list master
5cd5e8502f8213d17965f23c044ef3ee224e1cf2
brett@shell.qr1hi:~/4048$ arv-run-pipeline-instance --run-jobs-here --template grep_hash_pipeline.json  c1_grep::input=c1bad4b39ca5a924e481008009d94e32+210
arv-run-pipeline-instance 3334: create job: ["error searching /home/brett/4048 from 'master' to 'master', excluding []"] with attributes {:job=>{:script=>"grep", :script_parameters=>{:input=>"c1bad4b39ca5a924e481008009d94e32+210", :pattern=>"a"}, :script_version=>"master", :repository=>"/home/brett/4048", :owner_uuid=>"qr1hi-tpzed-5jakibnrp1qpty1", :is_locked_by_uuid=>"qr1hi-tpzed-5jakibnrp1qpty1", :submit_id=>"instance qr1hi-d1hrv-hvn98gb0pujulmy rand 1bjmrbav6cdnh", :state=>"Running"}, :find_or_create=>true}
arv-run-pipeline-instance 3334: component c1_grep new job failed

2014-12-11 15:23:33 +0000 -- pipeline_instance qr1hi-d1hrv-hvn98gb0pujulmy
c1_grep -                           -
c2_hash -                           -
arv-run-pipeline-instance 3334: job creation failed - giving up on this pipeline instance