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Idea #4566

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[Documentation] Introduce compute workflow / pipeline concepts in user guide

Added by Tom Clegg almost 10 years ago. Updated 8 months ago.

Status:
New
Priority:
Normal
Assigned To:
-
Category:
Documentation
Target version:
Start date:
Due date:
Story points:
1.0
Release:
Release relationship:
Auto

Description

The first page about running your own compute jobs (beyond using an existing template in Workbench) dives right into the deep end with bwa-mem and some UUIDs. http://doc.arvados.org/user/topics/running-pipeline-command-line.html

Before this page we need to
  • introduce the relevant concepts of pipeline templates, pipeline instances, components, and jobs
  • mention the basic features of pipeline templates
    • how data gets passed from one job to another in a pipeline with output_of
    • how script_parameters in a pipeline template relates to workbench UI, jobs, and task processes
  • offer a couple of different scenarios, with a summary of the appropriate way to build and invoke pipelines in each case (with links to the examples on the other tutorial pages).
Actions #1

Updated by Tom Clegg almost 10 years ago

  • Description updated (diff)
  • Category set to Documentation
Actions #2

Updated by Tom Clegg almost 10 years ago

  • Description updated (diff)
Actions #3

Updated by Tom Clegg almost 10 years ago

  • Description updated (diff)
Actions #4

Updated by Ward Vandewege over 3 years ago

  • Target version deleted (Arvados Future Sprints)
Actions #5

Updated by Peter Amstutz over 1 year ago

  • Release set to 60
Actions #6

Updated by Peter Amstutz 8 months ago

  • Target version set to Future
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