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Story #4566

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[Documentation] Introduce compute workflow / pipeline concepts in user guide

Added by Tom Clegg over 7 years ago. Updated 12 months ago.

Status:
New
Priority:
Normal
Assigned To:
-
Category:
Documentation
Target version:
-
Start date:
Due date:
% Done:

0%

Estimated time:
Story points:
1.0

Description

The first page about running your own compute jobs (beyond using an existing template in Workbench) dives right into the deep end with bwa-mem and some UUIDs. http://doc.arvados.org/user/topics/running-pipeline-command-line.html

Before this page we need to
  • introduce the relevant concepts of pipeline templates, pipeline instances, components, and jobs
  • mention the basic features of pipeline templates
    • how data gets passed from one job to another in a pipeline with output_of
    • how script_parameters in a pipeline template relates to workbench UI, jobs, and task processes
  • offer a couple of different scenarios, with a summary of the appropriate way to build and invoke pipelines in each case (with links to the examples on the other tutorial pages).
Actions #1

Updated by Tom Clegg over 7 years ago

  • Description updated (diff)
  • Category set to Documentation
Actions #2

Updated by Tom Clegg over 7 years ago

  • Description updated (diff)
Actions #3

Updated by Tom Clegg over 7 years ago

  • Description updated (diff)
Actions #4

Updated by Ward Vandewege 12 months ago

  • Target version deleted (Arvados Future Sprints)
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