Feature #477

Integrate trait-o-matic functionality into GET-Evidence

Added by Tom Clegg over 11 years ago. Updated almost 11 years ago.

Status:
Closed
Priority:
High
Assigned To:
Target version:
-
Start date:
Due date:
% Done:

0%

Estimated time:
Billable:
Estimatedhours:
Hours:
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Resolution:
Story points:
-

Description

GET-Evidence should subsume:
  • Directory of public genomes (like Trait-o-matic front page http://snp.med.harvard.edu)
  • Genome report page (like Trait-o-matic "view results")

PGP genome data should be imported directly/automatically from the "PGP profiles" site, rather than uploaded from a web form.

Trait-o-matic core (dbsnp lookups, nsSNP calls, and external variant db xrefs) should be ported to a warehouse mr-function to improve throughput and allow many genomes to be processed in parallel.

Trait-o-matic's "manual processing" features should be accessed through the data processing system using warehouse processing facilities:
  • Upload GFF (or provide warehouse locator, etc.)
  • View job status/results
  • Reprocess job

History

#1 Updated by Ward Vandewege almost 11 years ago

  • Project changed from External to GET-Evidence
  • Category deleted (GET-Evidence)

#2 Updated by Madeleine Ball almost 11 years ago

  • Status changed from New to Closed

Mission Accomplished.
fe199875

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