Story #4783

[CWL] Implement CWL prototype workflow runner

Added by Peter Amstutz almost 6 years ago. Updated over 5 years ago.

Status:
Resolved
Priority:
Normal
Assigned To:
Category:
-
Target version:
Start date:
03/10/2015
Due date:
% Done:

100%

Estimated time:
(Total: 0.00 h)
Story points:
2.0

Description

Implement a standalone pipeline runner for the common workflow language reference implementation. It will support all features agreed upon by the CWL community and be able to run all valid CWL pipelines which fit on a single node. This includes running tools in docker, passing output from one stage as input to the next stage, and implicit iteration/fanout.

Not including Arvados integration.


Subtasks

Task #5431: Implement workflow runner and add testsResolvedPeter Amstutz


Related issues

Related to Arvados - Story #4685: [Crunch] CWL prototype workflow runner in ArvadosResolved04/07/2015

Related to Arvados - Story #4687: [Crunch] Support Brad Chapman to port bcbio tools and workflows to CWLResolved01/12/2015

History

#1 Updated by Peter Amstutz almost 6 years ago

  • Description updated (diff)

#2 Updated by Peter Amstutz almost 6 years ago

  • Assigned To set to Peter Amstutz

#3 Updated by Tom Clegg almost 6 years ago

  • Target version changed from 2015-01-07 sprint to Arvados Future Sprints

#4 Updated by Peter Amstutz over 5 years ago

  • Target version changed from Arvados Future Sprints to 2015-03-11 sprint

#5 Updated by Peter Amstutz over 5 years ago

  • Subject changed from [CWL] Implement workflow runner for CWL to [CWL] Implement CWL prototype workflow runner
  • Description updated (diff)

#6 Updated by Peter Amstutz over 5 years ago

  • Status changed from New to In Progress

#7 Updated by Peter Amstutz over 5 years ago

  • Status changed from In Progress to Resolved

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