Show full PGP9 and PGP12 genomes on snp.med and GET-E
"I'd like to have PGP9 & PGP12 genomes processed and visible on snp.med and get-evidence sites as soon as possible, so we can review them. It's not blocking me from working on the paper, but I want to have as much time as possible for us to look over them and evaluate new variants as needed." (Madeleine)
#2 Updated by Tom Clegg over 11 years ago
PGP9 now points to http://snp.med.harvard.edu/results/job/169/Rosalynn_Gill
update jobs set human=16,label='cell line 21833, Incheon/PGP9',public=1 where id=169; update jobs set public=0 where id=32;
#3 Updated by Tom Clegg over 11 years ago
In evidence.oxf shell:
cd /home/get-evidence cat public_html/config.php; mysqldump -ael -uevidence -p evidence >~/evidence-@date +%s@.sql make update_genomes
In evidence.oxf mysql, remove links to previous data set (now that it is not listed as public on snp.med):
delete from variant_occurs where dataset_id='T/snp/32'; delete from datasets where dataset_id='T/snp/32';
#4 Updated by Madeleine Ball over 11 years ago
gff for Henry Louis Gates Jr (aka PGP12) can be found at:
wsa2@orchestra:/groups/pgp/illumina/pgp12$ md5sum HLGjr-snp.gff
Please process in Trait-o-matic and upload to GET-Evidence. Phenotype should be available soon. Cell-line identifiers should also be available soon.
Henry Louis Gates Jr.
#6 Updated by Tom Clegg over 11 years ago
PGP12 now appears at http://snp.med.harvard.edu -- currently with no portrait image.
Is it OK to use this image for his portrait?