Feature #489

Fix PharmGKB analysis so it matches against all SNPs, not just the nsSNPs

Added by Tom Clegg over 11 years ago. Updated almost 11 years ago.

Status:
Closed
Priority:
Immediate
Assigned To:
Target version:
-
Start date:
Due date:
% Done:

0%

Estimated time:
Billable:
Estimatedhours:
Hours:
Totalhours:
Resolution:
wontfix
Story points:
-

Description

Fix PharmGKB analysis so it matches against all SNPs, not just the nsSNPs

History

#1 Updated by Madeleine Ball over 11 years ago

You can get PharmGKB data from here (but it does not seem necessary to request the full XML dump at this time): A flat file with variant annotations is provided by (this is the only data required for this task):

Please note that PharmGKB should be an external resource in GET-Evidence there is probably little sense in tweaking Trait-o-matic!

#2 Updated by Tom Clegg over 11 years ago

  • Status changed from New to Closed
  • Resolution set to wontfix

Now that all PharmGKB variants are in GET-E, and GET-E matches on all SNPs, this is a non-issue.

#3 Updated by Ward Vandewege almost 11 years ago

  • Project changed from External to GET-Evidence
  • Category deleted (GET-Evidence)

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