Feature #497

Import and process raw reads for YRI trio data

Added by Madeleine Ball over 9 years ago. Updated over 8 years ago.

Status:
New
Priority:
Low
Assigned To:
Target version:
-
Start date:
Due date:
% Done:

0%

Estimated time:
Billable:
Estimatedhours:
Hours:
Totalhours:
Resolution:
Story points:
-

Description

http://developer.amazonwebservices.com/connect/entry.jspa?externalID=2899&categoryID=279

"The YRI Trio Dataset provides complete genome sequence data for three Yoruba individuals from Ibadan, Nigeria, which represent the first human genomes sequenced using Illumina’s next generation Sequence-by-Synthesis technology. For each genome, the dataset contains >30x average depth of paired 35-base reads.

This data set can be used for the following applications:

The development of alignment algorithms
The development of de novo assembly algorithms
The development of algorithms that define genetic regions of interest, sequence motifs, structural variants, copy number variations, and site-specific polymorphisms
To test the viability of annotation engines that start with raw sequence data"

History

#1 Updated by Ward Vandewege over 8 years ago

  • Project changed from External to GET-Evidence
  • Category deleted (GET-Evidence)

#2 Updated by Madeleine Ball over 8 years ago

  • Priority changed from Normal to Low

Also available in: Atom PDF