Story #4995

Package lightning specifically for users

Added by Sarah Guthrie over 4 years ago. Updated 3 months ago.

Status:
New
Priority:
Normal
Assigned To:
-
Target version:
Start date:
12/19/2014
Due date:
% Done:

100%

Estimated time:
(Total: 8.00 h)
Story points:
5.0

Description

Currently there is a ridiculous amount of set-up to run a server (whether on localhost or via Apache2).

  1. Design a branch meant to be used with another tool (possibly docker, possibly arvados?) that requires very little work on the part of the user
  2. Build the branch and tool to automatically set up lightning. This includes
  • Creating a library (like brca-lightning postgres database)
  • Populating the library with pre-existing library data, new data (from a population), or no data
  • Initializing lantern with population (if it exists)
  • Ensuring lantern and library are synced (conversion_to_cgf is defined)
  • Optionally running statistics on the library
  1. A long-term option that would be nice:
  • Specify a remote library to user
  • Add a population to the library. If the tiles are already known to the remote library, add a pointer (conversion_to_cgf and api call), otherwise, add the entire tilevariant
  • Initialize lantern with population
  • Ensure lantern is synced with the local and remote libraries

Subtasks

Task #4908: Write testingClosedSarah Guthrie

History

#1 Updated by Sarah Guthrie over 4 years ago

  • Story points set to 5.0

#2 Updated by Sarah Guthrie over 4 years ago

  • Target version set to 2015-01-23 sprint

#3 Updated by Sarah Guthrie over 4 years ago

  • Target version deleted (2015-01-23 sprint)

#4 Updated by Sarah Guthrie almost 4 years ago

  • Project changed from Curoverse Science to Lightning
  • Subject changed from Create lightning branch specifically designed for users to Package lightning specifically for users

#5 Updated by Sarah Guthrie almost 4 years ago

  • Target version set to Future sprints (Lightning)

#6 Updated by Jiayong Li 3 months ago

  • Target version changed from Future sprints (Lightning) to Tiling Future

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