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Bug #500

open

Trait-o-matic GET-E importer "AttributeError: 'tuple' object has no attribute 'remove'"

Added by Tom Clegg about 12 years ago. Updated over 9 years ago.

Status:
New
Priority:
Normal
Assigned To:
Target version:
-
Start date:
Due date:
% Done:

0%

Estimated time:
Billable:
Estimatedhours:
Hours:
Totalhours:
Resolution:
Story points:
-

Description

Some input files cause gff_get-evidence_map.py to crash:

==> /scratch/tmp/811786ad1ae74adfdd20dd0372abaaebc6246e343aebd01da0bfc4c02bf0106c-out/lock <==
Traceback (most recent call last):
  File "/home/trait/core/gff_get-evidence_map.py", line 295, in <module>
    main()
  File "/home/trait/core/gff_get-evidence_map.py", line 242, in main
    leftover_alleles.remove(ref_allele)
[[AttributeError]]: 'tuple' object has no attribute 'remove'

Files

Enrollment_Letter.jpg (233 KB) Enrollment_Letter.jpg Anonymous, 11/07/2012 10:46 AM
Actions #1

Updated by Ward Vandewege over 11 years ago

  • Project changed from 19 to GET-Evidence
  • Category deleted (Trait-o-matic)
Actions #2

Updated by Madeleine Ball over 11 years ago

  • Priority changed from High to Normal
Actions #3

Updated by Anonymous over 9 years ago

Hi Tom and Ward -

One of the links is broken, the other is slow (so may appear broken). See
comment from PGP participant below.

Screenshot attached. Please remove the snp.med....link.

Thanks!
Jason

Jason Bobe
Executive Director
PersonalGenomes.org
http://bit.ly/jasonbobe

---------- Forwarded message ----------
From: via RT
Date: Wed, Nov 7, 2012 at 12:47 AM
Subject: [HUPGP #500] Other: Enrollment Application Results Page -
Revision: 2012-04-23
To:

Wed Nov 07 00:47:07 2012: Request 500 was acted upon.
Transaction: Ticket created by
Queue: Support
Subject: Other: Enrollment Application Results Page - Revision:
2012-04-23
Owner: Nobody
Requestors:
Status: new
Ticket

User: John A Farris
Request category: Other

Two of the three URLs no longer work.
The only one that connected was: <<<
my.personalgenomes.org/profile/hu43860C >>>
Since there is a line under the URLs, they are difficult to read.

John Farris

!DSPAM:509a77e443461444913932!

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