Feature #507

Report of insufficiently evaluated variants meeting autoscore thresholds

Added by Madeleine Ball almost 9 years ago. Updated over 8 years ago.

Status:
New
Priority:
Normal
Assigned To:
Target version:
-
Start date:
Due date:
% Done:

0%

Estimated time:
Billable:
Estimatedhours:
Hours:
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Story points:
-

Description

I'd like to have a set of reports on the "reports" page for insufficiently evaluated variants in genomes that meet autoscore thresholds. So, "in genomes" + "insufficiently-evaluated" + equal to or above an "autoscore" threshold. I think I'd like to see thresholds of 3, 4, and 5.

A variant is "insufficiently evaluated" if it fails to meet these requirements:
(1) at least 4 of 6 categories entered
(2) either case/control or familial evidence score entered*
(3) either severity or treatability score entered*

*Aside: a score of "0" is different from "-", it means someone actually looked at noted that there is no evidence supporting that category. So "0" counts as having been entered.

History

#1 Updated by Ward Vandewege over 8 years ago

  • Project changed from External to GET-Evidence
  • Category deleted (GET-Evidence)

#2 Updated by Madeleine Ball over 8 years ago

  • Priority changed from High to Normal

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