https://dev.arvados.org/https://dev.arvados.org/favicon.ico?15576888422015-06-05T18:57:50ZArvadosLightning - Idea #5334: [API] Implement GET /callsets/{callset-name}/gvcf API callhttps://dev.arvados.org/issues/5334?journal_id=255902015-06-05T18:57:50ZSarah Guthriesallyeguthrie@gmail.com
<ul><li><strong>Subject</strong> changed from <i>Add API Call to Lightning: GET vcf-like-variants</i> to <i>[API] [Sprite] Implement POST /callsets/{callset-name}/gvcf and POST /callsets/{callset-name}/vcf API calls</i></li><li><strong>Description</strong> updated (<a title="View differences" href="/journals/25590/diff?detail_id=24999">diff</a>)</li></ul> Lightning - Idea #5334: [API] Implement GET /callsets/{callset-name}/gvcf API callhttps://dev.arvados.org/issues/5334?journal_id=255942015-06-05T19:00:13ZSarah Guthriesallyeguthrie@gmail.com
<ul><li><strong>Description</strong> updated (<a title="View differences" href="/journals/25594/diff?detail_id=25003">diff</a>)</li></ul> Lightning - Idea #5334: [API] Implement GET /callsets/{callset-name}/gvcf API callhttps://dev.arvados.org/issues/5334?journal_id=255952015-06-05T19:02:20ZSarah Guthriesallyeguthrie@gmail.com
<ul><li><strong>Description</strong> updated (<a title="View differences" href="/journals/25595/diff?detail_id=25004">diff</a>)</li></ul><p>Specifications - details:</p>
<p><strong>POST /callsets/{callset-name}/gvcf</strong><br />Requires a request containing information about the loci to return. Returns a list of gVCF lines for the callset at these loci.</p>
<p>Request body:</p>
<blockquote>
<p>{</p>
<blockquote>
<p>'loci' : [ <Locus>, <Locus>, ... ] OR { <string> : <Locus>, <string> : <Locus>, ... }</p>
</blockquote>
<p>}</p>
</blockquote>
<p>Response body:</p>
<blockquote>
<p>{</p>
<blockquote>
<p>(<string>, <Locus>) OR <Locus> : [</p>
<blockquote>
<p><gVCF-line>,<br /><gVCF-line>,<br />...</p>
</blockquote>
<p>],<br />(<string>, <Locus>) OR <Locus> : [</p>
<blockquote>
<p><gVCF-line>,<br /><gVCF-line>,<br />...</p>
</blockquote>
<p>],<br />...</p>
</blockquote>
<p>}</p>
</blockquote>
<p><strong>POST /callsets/{callset-name}/vcf</strong> <br />Requires a request containing information about the loci to return. Returns a list of VCF lines for the callset at these loci.</p>
<p>Request body:</p>
<blockquote>
<p>{</p>
<blockquote>
<p>'loci' : [ <Locus>, <Locus>, ... ] OR { <string> : <Locus>, <string> : <Locus>, ... },</p>
</blockquote>
<p>}</p>
</blockquote>
<p>Response body:</p>
<blockquote>
<p>{</p>
<blockquote>
<p>(<string>, <Locus>) OR <Locus> : [</p>
<blockquote>
<p><VCF-line>,<br /><VCF-line>,<br />...</p>
</blockquote>
<p>],<br />(<string>, <Locus>) OR <Locus> : [</p>
<blockquote>
<p><VCF-line>,<br /><VCF-line>,<br />...</p>
</blockquote>
<p>],<br />...</p>
</blockquote>
<p>}</p>
</blockquote> Lightning - Idea #5334: [API] Implement GET /callsets/{callset-name}/gvcf API callhttps://dev.arvados.org/issues/5334?journal_id=308852015-10-02T00:07:29ZSarah Guthriesallyeguthrie@gmail.com
<ul><li><strong>Subject</strong> changed from <i>[API] [Sprite] Implement POST /callsets/{callset-name}/gvcf and POST /callsets/{callset-name}/vcf API calls</i> to <i>[API] Implement GET /callsets/{callset-name}/gvcf </i></li><li><strong>Description</strong> updated (<a title="View differences" href="/journals/30885/diff?detail_id=30302">diff</a>)</li></ul> Lightning - Idea #5334: [API] Implement GET /callsets/{callset-name}/gvcf API callhttps://dev.arvados.org/issues/5334?journal_id=308862015-10-02T00:08:11ZSarah Guthriesallyeguthrie@gmail.com
<ul><li><strong>Project</strong> changed from <i>39</i> to <i>Lightning</i></li><li><strong>Subject</strong> changed from <i>[API] Implement GET /callsets/{callset-name}/gvcf </i> to <i>[API] Implement GET /callsets/{callset-name}/gvcf API call</i></li></ul> Lightning - Idea #5334: [API] Implement GET /callsets/{callset-name}/gvcf API callhttps://dev.arvados.org/issues/5334?journal_id=309082015-10-02T00:27:43ZSarah Guthriesallyeguthrie@gmail.com
<ul><li><strong>Target version</strong> set to <i>Future sprints (Lightning)</i></li></ul> Lightning - Idea #5334: [API] Implement GET /callsets/{callset-name}/gvcf API callhttps://dev.arvados.org/issues/5334?journal_id=744782019-05-15T18:22:13ZJiayong Lijli@curii.com
<ul><li><strong>Target version</strong> changed from <i>Future sprints (Lightning)</i> to <i>Tiling Future</i></li></ul>