Feature #539

call synonymous amino acids that match pathogenic reference alleles (e.g. F5 R534R)

Added by Madeleine Ball over 8 years ago.

Status:
New
Priority:
Normal
Assigned To:
-
Target version:
-
Start date:
03/08/2011
Due date:
% Done:

0%

Estimated time:
Billable:
Estimatedhours:
Hours:
Totalhours:
Resolution:
Story points:
-

Description

The easiest example is F5 Leiden -- an amino acid "change" that happens to be reference. We want the nonsynonymous caller to (optionally) check the GET-Evidence flat file for instances of interesting/pathogenic gene + synonymous change, then check that position in the gene and call it as a "variant" rather than ignore it.


Related issues

Has duplicate GET-Evidence - Feature #601: Find consensus nonref alleles & call when matching refNew07/07/2011

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