https://dev.arvados.org/https://dev.arvados.org/favicon.ico?15576888422011-05-23T21:56:51ZArvadosGET-Evidence - Feature #578: Improve reporting of variant/allele frequencieshttps://dev.arvados.org/issues/578?journal_id=23452011-05-23T21:56:51ZTom Cleggtom@curii.com
<ul><li><strong>Status</strong> changed from <i>In Progress</i> to <i>Feedback</i></li><li><strong>% Done</strong> changed from <i>0</i> to <i>100</i></li><li><strong>Resolution</strong> set to <i>fixed</i></li></ul>Done:
<ul>
<li>Fixed update_variant_frequency.php to use population with highest denominator, instead of summing populations (<a class="changeset" title="fix allele frequency merging: use the db with the highest denominator, instead of using sum" href="https://dev.arvados.org/projects/get-evidence/repository/8/revisions/985000f9f73e62256936f7f18baa936da38982d6">985000</a>, <a class="changeset" title="select frequency data source with highest denominator, instead of adding all num/denom" href="https://dev.arvados.org/projects/get-evidence/repository/8/revisions/ec71590345989527ffb2f205153fd5a62e6f772f">ec7159</a>)</li>
<li>Updated import_variant_frequency.php to use "for getev" format (<a class="changeset" title="look up "unknown" variant_ids; update expected file format" href="https://dev.arvados.org/projects/get-evidence/repository/8/revisions/ea8475c340b315dc998f7d7a755ff5dbc333d8e3">ea8475c</a>) -- also, look up "unknown" variant_ids using variant_name</li>
<li>Imported parsed_for_getev_new.txt from mball on production site. E.g., <a href="http://evidence.personalgenomes.org/COL4A1-Q1334H" class="external">COL4A1-Q1334H</a>, <a href="http://evidence.personalgenomes.org/ATAD3C-A91V" class="external">ATAD3C-A91V</a></li>
</ul>